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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGCCAATCATTTTGCTGAACGTATGGGTGTGAGGAAGACATGGATGTCTGCTGTGCACAAGTCACCAAGCACGGTGGCTCGGTTTTTCGTTGCATTGgtaaacacttacccaaaggcttagattacttgatttgttttgtgtgcttatgctgaaggtgtttcttaattccag

Basic information

species Zea mays
transcript GRMZM2G399158_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G399158_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g09690.1 (Oryza sativa), 5'ss of exon 3
ATCAGCCAATCATTTTGCTGAACGTATGGGTGTGAGGAAGACATGGATGTCTGCTGTGCACAAGTCACCAAGCACGGTGGCTCGGTTTTTCGTTGCATTGgtaaac-------acttacccaaaggcttagattacttgatttgttttgtgtgcttatgctgaaggtgtttcttaattccag
||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||    || |||||||    ||| ||||| || || |||||| ||||||         | | ||   |  | ||   || ||| || | ||  ||   | |  ||||| |   |||||| |||||||
ATCTGGCAATCATTTTGCTGAGCGTATGGGTGTGAGGAAGACATGGATGTCTGCTGTCAGAAACTCACCAAATGTGGTAGCTCGTTTCTTTGTTGCACTGgtaattcttgagaattaacttgatagatttccttgcttcatgtcttccgtaaacctgagctgatgaactttctttattccag

upper sequence: GRMZM2G399158_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g16480.1 (Oryza sativa), 5'ss of exon 1
ATCAGCCAATCATTTTGCTGAACGTATGGGTGTGAGGAAGACATGGATGTCTGCTGTGCACAAGTCACCAAGCACGGTGGCTCGGTTTTTCGTTGCATTGgtaa-------acacttacccaaaggcttagattacttgatttgttttgtgtgcttatgctgaaggtgtttcttaattccag------------------
||| | ||||||||||||||| || |||||||||||||||||||||||||||||||| |  || |||||||    ||| ||||| || || |||||| ||||||         ||| ||   |  | ||   || ||| || | ||   |   | |  ||||| |    ||||| || ||||                  
ATCTGGCAATCATTTTGCTGAGCGCATGGGTGTGAGGAAGACATGGATGTCTGCTGTCCGAAACTCACCAAATGTGGTAGCTCGTTTCTTTGTTGCACTGgtaattcttgagaactaacttgatagatttccttgcttcatgtcttccataaacctgagctgatgaacgttctttatcccagcatggccgaaaagaagtg

upper sequence: GRMZM2G399158_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA06G20030.1 (Glycine max), 5'ss of exon 3
ATCAGCCAATCATTTTGCTGAACGTATGGGTGTGAGGAAGACATGGATGTCTGCTGTGCAC---AAGTCACCAAGCACGGTGGCTCGGTTTTTCGTTGCATTGgtaaa---cacttacccaaaggcttagattactt-gattt--gttttgtgtgcttatgctgaa--ggtgtttcttaattccag----------------
    |  || ||||||||||| ||||||| |||||||||| ||||||||     |  || |   || ||   |     ||| ||||| || || || ||| ||||||     ||| |  || ||||||  | || || || ||  | | |   | || ||  | |   || |||||||| |    |                
---TGGAAACCATTTTGCTGAGCGTATGGCTGTGAGGAAGTCATGGATGCAACATAGGCTCGTCAAATCTGGAGCAGTGGTTGCTCGTTTCTTTGTGGCACTGgtaacggttactaattcacaggctttcagtatttagagttaagatcttatttctgatattcagttggggtttcttactatttgattgaaatcttggcag