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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTACCAAGACCAAGAAGCAGAACGCACCTGCGAAGCTCAGCCACAAGTCTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcacatggaatcacattatgcttgattgtacggtaatatggcagtgtttgttttgctactgcaatgcgtggcttttttatgtattggatattgt...

Basic information

species Zea mays
transcript GRMZM2G394827_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G394827_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g46430.1 (Oryza sativa), 5'ss of exon 3
TACTACCAAGACCAAGAAGCAGAACGCACCTGCGAAGCTCAGCCACAAGTCTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcacatggaatcacat-tatgcttgattgtacggtaatatggcagtgtttgttttgctact-gcaatgcgtg-gcttttttatgtattggatattgt
 || |||||||||||||||||||| || || |||||||||  ||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||| |||||| || ||  || | | ||| |   |    |    | |        |||   |||||   ||  |   ||  ||  | |    ||     ||   
CACAACCAAGACCAAGAAGCAGAATGCCCCAGCGAAGCTCTACCACAAGTCTGTGATGCGCAAGGAGTTCCGCAAAATGGCTAAGGCTGTCAAGAACCAGgtattagcacgtgaaactacttctttgcatagcttcttgtccttgttatgcc--ttgcgatgctagaagctttaaatgcactgctatgaacataaagcatcc-

upper sequence: GRMZM2G394827_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g57540.1 (Oryza sativa), 5'ss of exon 3
TACTACCAAGACCAAGAAGCAGAACGCACCTGCGAAGCTCAGCCACAAGTCTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtact-agcacatggaatcaca-ttatgcttgattgtacggtaatatggcagtgtttgtttt-gctactgcaatgcgtggcttttttatgtattggatattgt
 || |||||||||||||||||||| || || || ||||||  ||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| |  | | ||  |  |  | ||     | ||| |   |   | ||    | | || ||| | | |     || |  |    || || | | |  ||||| 
CACGACCAAGACCAAGAAGCAGAATGCCCCAGCTAAGCTCTACCACAAGTCTGTGATGCGCAAGGAGTTCCGCAAGATGGCTAAGGCTGTCAAGAACCAGgtatttggaagataaatgcttagtttcatgtcattattttgccttgtgatgctctatgctttagatgcactgttgtgatgagccttaatatctcg--tattg-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37392746|gb|CF633626.1|CF633626
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|18649627|gb|BM498446.1|BM498446
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60352135|gb|DN219108.1|DN219108
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|89247696|gb|DY619482.1|DY619482
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|50323416|gb|CO518542.1|CO518542
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATTTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60346709|gb|DN213682.1|DN213682
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|91048483|gb|EB158901.1|EB158901
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60341855|gb|DN208828.1|DN208828
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|5740488|gb|AI948178.1|AI948178
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|32809117|gb|CD961351.1|CD961351
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|30087987|gb|CB886192.1|CB886192
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|9742612|gb|BE518760.1|BE518760
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|6031594|gb|AI668494.2|AI668494
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|86466958|gb|DY233328.1|DY233328
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|4804571|gb|AI665594.2|AI665594
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60344451|gb|DN211424.1|DN211424
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60396562|gb|DN229431.1|DN229431
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|37397264|gb|CF635927.1|CF635927
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|211372090|gb|FL076478.1|FL076478
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|9953964|gb|BE640547.1|BE640547
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|8665876|gb|BE186692.1|BE186692
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|32806827|gb|CD959061.1|CD959061
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|211004085|gb|FL433379.1|FL433379
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60344773|gb|DN211746.1|DN211746
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|71763102|gb|DR961039.1|DR961039
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGTTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|211498632|gb|FL475537.1|FL475537
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60399308|gb|DN232122.1|DN232122
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|32799164|gb|CD951400.1|CD951400
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTGGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|91877502|gb|EB407459.1|EB407459
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60397312|gb|DN230128.1|DN230128
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|94473610|gb|EB702568.1|EB702568
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGTTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|78026395|gb|DV494782.1|DV494782
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|9733369|gb|BE512226.1|BE512226
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GATTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagG-TTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAG
EST: gi|91055821|gb|EB166239.1|EB166239
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60359639|gb|DN226612.1|DN226612
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|31557930|gb|CD527142.1|CD527142
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|211498633|gb|FL475538.1|FL475538
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|16926566|gb|BM079634.1|BM079634
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60359769|gb|DN226742.1|DN226742
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|9255150|gb|BE345618.1|BE345618
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|30306772|gb|CD001445.1|CD001445
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|71448804|gb|DR829854.1|DR829854
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|78077420|gb|DV505854.1|DV505854
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60340037|gb|DN207010.1|DN207010
EST:     CAAGGAGTTCCGCAAGATGGCCAAGGTTGTGAAAAACCAG                         GTTAGTGACAACTAGTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|20300270|gb|BQ163213.1|BQ163213
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|211308013|gb|FL101160.1|FL101160
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|37376577|gb|CF624829.1|CF624829
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|211374748|gb|FL076486.1|FL076486
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60352621|gb|DN219594.1|DN219594
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|33467200|gb|CF244249.1|CF244249
EST:     TTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATTTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|211514565|gb|FL432504.1|FL432504
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|20300560|gb|BQ163503.1|BQ163503
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60396584|gb|DN229453.1|DN229453
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|78113289|gb|DV531681.1|DV531681
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60399099|gb|DN231913.1|DN231913
EST:     AAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: AAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|15082597|gb|BI389281.1|BI389281
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|87153139|gb|DY397928.1|DY397928
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|84969839|gb|DW468254.1|DW468254
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGTTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|32826107|gb|CD965785.1|CD965785
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|211305999|gb|FL101159.1|FL101159
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60337678|gb|DN204651.1|DN204651
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATTTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|71421266|gb|DR805364.1|DR805364
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|9742818|gb|BE518966.1|BE518966
EST:     ATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: ATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|21843254|gb|BQ703835.1|BQ703835
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTTCTTGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|32807872|gb|CD960106.1|CD960106
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|76926032|gb|DV170693.1|DV170693
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGTTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|94478235|gb|EB707193.1|EB707193
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|30087932|gb|CB886137.1|CB886137
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GCTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|31909339|gb|CD650869.1|CD650869
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|33104000|gb|CF063960.1|CF063960
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCAGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|211107225|gb|FL478039.1|FL478039
EST:     CTGTGATGTGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|21891436|gb|BQ744649.1|BQ744649
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTAACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|211175879|gb|FL475293.1|FL475293
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|67013976|gb|CO442725.1|CO442725
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|5608413|gb|AI901990.1|AI901990
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|74241858|gb|DT649772.1|DT649772
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACTACCAAGACCAAGAAGCAGAACGCACCTGCGAAGCTCAGCCACAAGTCTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcacatggaatcacattatgcttgattgtacggtaatatggcagtgtttgttttgctactgcaatgcgtggcttttttatgtattggatattgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG