1 5' 3' | 2 5' 3' | 3 5' 3' |
CAGTCTATCTGCATTTGGAGGGTTTTTCAGCTTTGGTGACTTCTCAAATAAGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgagttaattatactttctcaatatttcttgtctccagtgtcacaatgttccagtactgcctagtaaagtcgatctttttcatcaccaaagaat...
species | Zea mays |
transcript | GRMZM2G394410_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|76925550|gb|DV170479.1|DV170479
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTGACAATAACAACCATEST: gi|50325381|gb|CO520507.1|CO520507
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCAT
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|76291618|gb|DV031186.1|DV031186
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|76930321|gb|DV172337.1|DV172337
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|32841346|gb|CD981027.1|CD981027
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|76281948|gb|DV021516.1|DV021516
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAEST: gi|76018078|gb|DT945248.1|DT945248
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACA
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|91871803|gb|EB401760.1|EB401760
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|89760965|gb|DY689166.1|DY689166
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|33100155|gb|CF060115.1|CF060115
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGTGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|32841591|gb|CD981272.1|CD981272
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|76280469|gb|DV020037.1|DV020037
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|32841104|gb|CD980785.1|CD980785
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|74241488|gb|DT649402.1|DT649402
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|91878188|gb|EB408145.1|EB408145
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|78114180|gb|DV532569.1|DV532569
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|33100439|gb|CF060399.1|CF060399
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|32841031|gb|CD980712.1|CD980712
genomic: AGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|78073863|gb|DV502297.1|DV502297
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|76919522|gb|DV167759.1|DV167759
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|89764283|gb|DY691146.1|DY691146
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|32841265|gb|CD980946.1|CD980946
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|91053007|gb|EB163425.1|EB163425
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|211118088|gb|FL110975.1|FL110975
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: GCCGCA-TAAGAAAA-CTCCCACAAGAAGA-CCCCAACAACCTCCCCCAG AATAA-GGCCAGCCTAACAEST: gi|32840910|gb|CD980591.1|CD980591
genomic: GC-GCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACA
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|32841114|gb|CD980795.1|CD980795
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|32841073|gb|CD980754.1|CD980754
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|71769244|gb|DR967181.1|DR967181
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|211118086|gb|FL110973.1|FL110973
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|32841024|gb|CD980705.1|CD980705
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|76284557|gb|DV024125.1|DV024125
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|76920838|gb|DV168333.1|DV168333
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGGEST: gi|32841678|gb|CD981359.1|CD981359
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
EST: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAG AATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
genomic: AGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgag ... gaaatttcagAATAAAGGCCAGCCTAACAATAACAACCATGAAGCACTGAGCAACGAGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTCTATCTGCATTTGGAGGGTTTTTCAGCTTTGGTGACTTCTCAAATAAGCGCAATAAGAAAAACTCCAACAAGAAGAACCCCAACAACCTCCCCCAGgtaaattgagttaattatactttctcaatatttcttgtctccagtgtcacaatgttccagtactgcctagtaaagtcgatctttttcatcaccaaagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaagaa