1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATAGGATACTTAACAAGATGGGTGAAGgttagtgtgccccttctgtactgctatataatattctatcctgcagtgatctttgttcttagctggaatgcttagtttcggacaaggatgacatggttttctatgttctcagtcccaacacttttcattgcttccattccatgctatatttatcgttccaatctgtgtcacag
species | Zea mays |
transcript | GRMZM2G386991_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATAGGATACTTAACAAGATGGGTGAAG GGACATTTGGTCAAGTTTTGGAGTGCTGGGACTTGGAAAACCAAGAAGCAGEST: gi|31664258|gb|CD572983.1|CD572983
genomic: ATAGGATACTTAACAAGATGGGTGAAGgttagtgtgc ... tgtgtcacagGGACATTTGGTCAAGTTTTGGAGTGCTGGGACTTGGAAAACCAAGAAGCAG
EST: ATAGGATACTTAACAAGATGGGTGAAG GGACATTTGGTCAAGTTTTGGAGTGCTGGGACTTGGAAAACCAAGAAGCAGEST: gi|149089547|gb|EE178794.2|EE178794
genomic: ATAGGATACTTAACAAGATGGGTGAAGgttagtgtgc ... tgtgtcacagGGACATTTGGTCAAGTTTTGGAGTGCTGGGACTTGGAAAACCAAGAAGCAG
EST: ATAGGATACTTAACAAGATGGGTGAAG GGACATTTGGTCAAGTTTTGGAGTGCTGGGACTTGGAAAACCAAGAAGCAGEST: gi|211529868|gb|FL149407.1|FL149407
genomic: ATAGGATACTTAACAAGATGGGTGAAGgttagtgtgc ... tgtgtcacagGGACATTTGGTCAAGTTTTGGAGTGCTGGGACTTGGAAAACCAAGAAGCAG
EST: ATAGGATACTTAACAAGATGGGTGAAG GGGACATTTGGTCAAGTTTTGGAG
genomic: ATAGGATACTTAACAAGATGGGTGAAGgttagtgtgc ... tgtgtcacagGG-ACATTTGGTCAAGTTTTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGGATACTTAACAAGATGGGTGAAGgttagtgtgccccttctgtactgctatataatattctatcctgcagtgatctttgttcttagctggaatgcttagtttcggacaaggatgacatggttttctatgttctcagtcccaacacttttcattgcttccattccatgctatatttatcgttccaatctgtgtcacag
- - - - - - - AAGATG