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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTGGCAAATTTGCTTGGTTGTTGCTGTGAAGGCGATGAGAGATTGCTTGTTGCAGAATACATGCCCAATGATACGCTAGCGAAGCACCTTTTCCATTgtgagttctttgaaaacatagttatgtttagcattacaaaacaatttgcattcataatctgttgcttgactacaaggaattaaggatgatgccatgacat...

Basic information

species Zea mays
transcript GRMZM2G382104_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G382104_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g58750.2 (Oryza sativa), 5'ss of exon 4
-AGGTTGGCAAATTTGCTTGGTTGTTGCTGTGAAGGCGATGAGAGATTGCTTGTTGCAGAATACATGCCCAATGATACGCTAGCGAAGCACCTTTTCCATTgtgagtt-ctttgaaaacatagttatgtttagcattacaaaacaatttgcattcataatc-tgttgcttgactacaaggaattaaggatgatgccatgacat--
 ||||| |||| ||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |  || |    | ||    |   || |||  ||    | ||      | |||   |   ||    ||  ||   |    ||| |  |||  |    
AAGGTTAGCAA-TTTGCTTGGCTGTTGCTGCGAAGGTGACGAGAGATTGCTTGTTGCAGAATACATGCCCAATGACACACTAGCGAAGCATCTTTTCCATTgtgagttgccatgcatttcttgtcgcat---gcctta-gaacttttatgttgctgtcatcacatcaattagtaactgggttctgttcatggttacatttccgca

upper sequence: GRMZM2G382104_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA05G37870.1 (Glycine max), 5'ss of exon 5
AGGTTGGCAAATTTGCTTGGTTGTTGCTGTGAAGGCGATGAGAGATTGCTTGTTGCAGAATACATGCCCAATGATACGCTAGCGAAGCACCTTTTCCATTgtgagttctttgaaaaca--tagttatgtttagcattacaaaacaatttgcattcataatctgttgcttgactacaaggaattaaggatgatgccatgacat
|| |||  |||| ||||||| ||||| |||||||| || || || || |||||||||||||| ||||||||||||||  |  | |||||  | ||||||||| ||| | |    | ||  || ||  ||||  |  | ||  |   || ||||| |     |   | |  |   ||     |||      |  | ||    |
AGATTGATAAATCTGCTTGGATGTTGTTGTGAAGGTGAAGAAAGGTTACTTGTTGCAGAATATATGCCCAATGATACTTTGACAAAGCATTTATTCCATTgtaagtgcataactagcaattaattcagtttgcc--tgcattagctttggcatttacttgtttgggttctaggtcagactcttatcctgaacacaatctggt

upper sequence: GRMZM2G382104_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G01730.2 (Glycine max), 5'ss of exon 4
AGGTTGGCAAATTTGCTTGGTTGTTGCTGTGAAGGCGATGAGAGATTGCTTGTTGCAGAATACATGCCCAATGATACGCTAGCGAAGCACCTTTTCCATTgtgagttctttgaaaacatagttatgtttagcattacaaaacaatttgcattcataatctgtt-gcttgactacaaggaattaaggatgatgccatgacat--
|| |||  |||| ||||||| ||||| |||||||| || || || || |||||||||||||| ||||||||||||||  | || |||||  | ||||||||| ||| | |  ||   | | |||  || ||  |  ||  |  |  |       | |  |||| |  |   || |   || |       |  |  ||||    
AGATTGATAAATCTGCTTGGATGTTGTTGTGAAGGTGAAGAAAGGTTACTTGTTGCAGAATATATGCCCAATGATACTTTGGCAAAGCATTTATTCCATTgtaagtgcat--aactgacaatta-attcagtttgccagcattagctttgccatttacttgtttgtatttttaaatcaaactcttatctaaccagtgactgag

upper sequence: GRMZM2G382104_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 4
AGGTTGGCAAATTTGCTTGGTTGTTGCTGTGAAGGCGATGAGAGATTGCTTGTTGCAGAATACATGCCCAATGATACGCTAGCGAAGCACCTTTTCCATTgt--gagttctttgaaaacatagttatgtttagcat-tacaaaacaatttgcattcata-atctgttgcttgactacaaggaattaaggatgatgccatgacat
||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||| ||||||||||| || || || ||||||||||| ||||||  ||| || ||  |  |||  ||   |     |  |    |||| | || |||  ||  |||     || |  | | | | || | | |  ||         
AGGTTGGCAAATTTGCTTGGTTGTTGCTGTGAAGGGGAGGAGAGGTTGCTTGTGGCAGAATATATGCCCAATGAAACACTTGCAAAGCACCTTTTTCATTgtaagagctccttttatgcattttttaatcctttaagtgttgaaca-tctg-attggtatgtcttaaatttaataatatgtagtttacggttttgttgcctt--

upper sequence: GRMZM2G382104_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA07G07850.2 (Glycine max), 5'ss of exon 4
AGGTTGGCAAATTTGCTTGGTTGTTGCTGTGAAGGCGATGAGAGATTGCTTGTTGCAGAATACATGCCCAATGATACGCTAGCGAAGCACCTTTTCCATTgt--gagttctttgaaaacatagtt---atgtttagcattacaaaacaatttgcattcataatctgttgcttgactacaaggaattaaggatgatgccatgacat
||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||| ||||||||||| || || || ||||||||||| ||||||  ||| || ||  |  |||  ||   ||   |   | | |  ||||  |       ||    |     |    |  | ||  ||   |||  |  | |     
AGGTTGGCAAATTTGCTTGGTTGTTGCTGTGAAGGAGAGGAGAGGTTGCTTGTGGCAGAATATATGCCCAATGAAACACTTGCAAAGCACCTTTTTCATTgtaagagctccttttatgcattttttttattcctttaagtgctgaacatctgatcactatgtcttaaatttatggtttacggttttgttgatttttgctt-----

upper sequence: GRMZM2G382104_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv15s0046g02900.t01 (Vitis vinifera), 5'ss of exon 4
AGGTTGGCAAATTTGCTTGGTTGTTGCTGTGAAGGCGATGAGAGATTGCTTGTTGCAGAATACATGCCCAATGATACGCTAGCGAAGCACCTTTTCCATTgtgagttctttgaaaacatagttatgtttagcattacaaaacaatttgcattcataatctgttgcttgactacaaggaattaaggatgatgccatgacat
|| ||||||||||||||||||||||| ||||| |   |||| || ||||| || || ||||| ||||||||||| || || || || ||||||||||||||| |||| || | | |   |    ||||    |   |  ||   ||      |||    |      ||  |   |    ||     || | |      ||
AGATTGGCAAATTTGCTTGGTTGTTGTTGTGAGGATAATGAAAGGTTGCTGGTGGCGGAATATATGCCCAATGAAACACTTGCAAAACACCTTTTCCATTgtaagtttttggtacaggaataactgttgtaaagctctcaatggttctttagcatgtgttagaagatgttttttaacctttgcacttgttcctgatgtat

upper sequence: GRMZM2G382104_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv02s0025g03550.t01 (Vitis vinifera), 5'ss of exon 5
AGGTTGGCAAATTTGCTTGGTTGTTGCTGTGAAGGCGATGAGAGATTGCTTGTTGCAGAATACATGCCCAATGATACGCTAGCGAAGCACCTTTTCCATTgtgagttctttgaaaacatagttatgtttagcattacaaaacaatttgcattcataatctgttgcttgactacaaggaattaaggatgatgccatgacat
|| ||||||||||||||||||||||| | |||||| |||||||| || ||||| |||||||  ||||||||||| || || || |||||||| || |||||| ||||  ||  | |   |        |  | || || |    || |||||  |      ||  ||   |  ||| |||  |   |   |  |    ||
AGATTGGCAAATTTGCTTGGTTGTTGTTCTGAAGGAGATGAGAGGTTACTTGTCGCAGAATTTATGCCCAATGACACACTTGCAAAGCACCTGTTTCATTgtaagtttcttagacatgcaacatctggtgaccttgcatatgctttagcatttgtgcaacatttattttatttaagaaatctatatttgggatactcaat

upper sequence: GRMZM2G382104_T02 (Zea mays), 5'ss of exon 4
lower sequence: PP1S122_66V6.1 (Physcomitrella patens), 5'ss of exon 3
AGGTTGGCAAATTTGCTTGGTTGTTGCTGTGAAGGCGATGAGAGATTGCTTGTTGCAGAATACATGCCCAATGATACGCTAGCGAAGCACCTTTTCCATTgtgagt------tctttgaaaacata-gttatgtttagcattacaaaacaatttgcattcataatctgttgcttgactacaaggaattaaggatgatgccatgacat-----------------------------------------------------------------------------------
|| ||||  |||||| | || |  |||||||| || |||||| |||| |||||||| ||||||||||||||||| || ||  | |  ||  | || || |||  ||      ||||  |   | |  ||| | |||    || |    || ||    | ||||       | |     | |    |   || || || |||     |                                                                                   
AGATTGGTGAATTTGATCGGCTACTGCTGTGAGGGTGATGAGCGATTACTTGTTGCGGAATACATGCCCAATGACACTCTTTCTAGACATTTATTTCACTgtaggtgctctttcttgtagtgcgtccgttttttttcttttttcttttcacttaagttgcata--tcacagatccttcatagaagacggagcattatcccaatctttacggttgagttgaagagcgcaattttatcgtttcggctttccgtaaagatggttaaggtttgttgatttttgaaaatgcacag