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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCCAAGTGACGATTGCCACAGCAATGGTATTCTGTCATCGTTTTTACCTTCGTCAATCCCTTGCAAAAAATGATAGACGAgtaagtctaattcgatgattgtctctagttttggttgtccatggttgccaacatttcctttaagctttataagttataactgcattgccatagaaacttt...

Basic information

species Zea mays
transcript GRMZM2G377311_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G377311_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g30020.2 (Oryza sativa), 5'ss of exon 3
GCCCCAAGTGACGATTGCCACAGCAATGGTATTCTGTCATCGTTTTTACCTTCGTCAATCCCTTGCAAAAAATGATAGACGAgtaag----tctaattcgatgattgtctctagttttggttgtccatggttgccaacatttcctttaagctttataagttataactgcattgccatagaaacttt
||| ||||| || ||||| ||||| || || |||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||    |  ||| |   | | ||  ||  |||||    |  |||| || | |  | || ||||     ||    |||||  | ||  | ||||    |   
GCCACAAGTCACTATTGCTACAGCTATTGTGTTCTGTCACCGTTTTTACCTTCGTCAGTCCCATGCAAAAAATGATAGACGAgtaagtactttcaatgcttggttcgttcctccttttgtggttttatggatggctatttctcttttagttagtagcctttata-ttacaacgacatatttgc---

upper sequence: GRMZM2G377311_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv19s0027g01670.t01 (Vitis vinifera), 5'ss of exon 2
GCCCCAAGTGACGATTGCCACAGCAATGGTATTCTGTCATCGTTTTTACCTTCGTCAATCCCTTGCAAAAAATGATAGACGAgtaagtctaattcgatgattgtctcta--gttttggttgtccatggttgccaacatttcctttaagctttataagttataact-gcattgccatagaaacttt-
|||||| || || ||||| ||||||||  |||| ||||| ||||| | |||||||||||||| |||||| ||||| ||| | || |||||| || |||  || |    |   | |   || || ||  |     | ||||||     | |   | |   |||| | | |  | ||| ||   | | 
GCCCCAGGTAACAATTGCTACAGCAATCATATTTTGTCACCGTTTCTTCCTTCGTCAATCCCATGCAAAGAATGACAGAAGGgtgagtcta-tttgattcttttacaaattatatcaattttctatc-tgattgatatttccagctggat--gtgaccaataattagaaaggtcattgatcatatg

upper sequence: GRMZM2G377311_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S119_132V6.2 (Physcomitrella patens), 5'ss of exon 4
GCCCCAAGTGACGATTGCCACAGCAATGGTATTCTGTCATCGTTTTTACCTTCGTCAATCCCTTGCAAAAAATGATAGACGAgtaagtct----aattcgatgattgtctctagttttggtt-----gtccatggttgccaacatttcctttaagctttataagttataactgcattgccatagaaacttt---------------------------------
 ||||||||||| ||||| || || || |||||||| ||||| |||| || ||| ||||| | |||||||||||| ||||  || ||| |    ||  |   ||||    ||  ||| |||           || |      ||| | ||  |   ||    | || | |     |||  |     | ||                                  
TCCCCAAGTGACTATTGCAACTGCCATTGTATTCTGCCATCGGTTTTTCCATCGACAATCACATGCAAAAAATGACAGACTTgtgagtatctgcaagccctggattcctccttatttaggtccagggaattgtgatcctaggcatgtactacagctttgcggatttgtgaacaatttgtaacttttatttgttcttgtgctcatgagtatgtgtatttttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211518784|gb|FL067253.1|FL067253
EST:     TCTGTCATCGTTTTTACCTTCGTCAATCCCTTGCAAAAAATGATAGACGA                         ATAATCGCTACT
genomic: TCTGTCATCGTTTTTACCTTCGTCAATCCCTTGCAAAAAATGATAGACGAgtaagtctaa ... atccacacagATAATCGCTACT