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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTACACACACATATGTCCTGGAGACCAAAACACAGGGCAGGTTCCAGGGTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccccccccccccccgacctctactatacataattttagtgtttcttatgttatacatcttgtattatcctcttattttttacatcgctattgcttggcccatggtatttagttaaatctaatgttttgtatctgttcaag

Basic information

species Zea mays
transcript GRMZM2G376727_T05
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G376727_T05 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g01307.2 (Oryza sativa), 5'ss of exon 3
TGCTACACACACATATGTCCTGGAGACCAAAACACAGGGCAGGTTCCAGGGTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccccccccccccccgacctctactatacataattttagtgtttcttatgttatacatcttgtattatcctcttattttttacatcgctattgcttggcccatggtatttagttaaatctaatgttttgtatctgttcaag
|||| | ||  ||| |||| |||||||||||  |||||||||||| || |||||||| ||  ||||||| || ||||||||||||||| |||| ||||||||     |     | |   |  || | |   |     || || ||   || || | ||| | |     |  | | ||  |||  ||   || |||     ||      | ||||   || ||                         
TGCTTCGCATGCATTTGTCTTGGAGACCAAAGTACAGGGCAGGTTTCAAGGTTCACCTGCGGTTATTACCTATCGTGTTCCCACAAAGGCTGCGCTTCAGgtttaatctgttacacttacacacttttttaa-----aacttcagctcttttttttttaaagaaaa-atgctgttctgctatgcttgcaattgct--caattttttttttgtat--ggtgaag------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15590113|gb|BI674729.1|BI674729
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|211354951|gb|FL243591.1|FL243591
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACT