Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTACACACACATATGTCCTGGAGACCAAAACACAGGGCAGGTTCCAGGGTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccccccccccccccgacctctactatacataattttagtgtttcttatgttatacatcttgtattatcctcttattttttacatcgctattgcttggcccatggtatttagttaaatctaatgttttgtatctgttcaag

Basic information

species Zea mays
transcript GRMZM2G376727_T04
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G376727_T05 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g01307.2 (Oryza sativa), 5'ss of exon 3
TGCTACACACACATATGTCCTGGAGACCAAAACACAGGGCAGGTTCCAGGGTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccccccccccccccgacctctactatacataattttagtgtttcttatgttatacatcttgtattatcctcttattttttacatcgctattgcttggcccatggtatttagttaaatctaatgttttgtatctgttcaag
|||| | ||  ||| |||| |||||||||||  |||||||||||| || |||||||| ||  ||||||| || ||||||||||||||| |||| ||||||||     |     | |   |  || | |   |     || || ||   || || | ||| | |     |  | | ||  |||  ||   || |||     ||      | ||||   || ||                         
TGCTTCGCATGCATTTGTCTTGGAGACCAAAGTACAGGGCAGGTTTCAAGGTTCACCTGCGGTTATTACCTATCGTGTTCCCACAAAGGCTGCGCTTCAGgtttaatctgttacacttacacacttttttaa-----aacttcagctcttttttttttaaagaaaa-atgctgttctgctatgcttgcaattgct--caattttttttttgtat--ggtgaag------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211340832|gb|FL479597.1|FL479597
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|15053451|gb|BI358996.1|BI358996
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|7135675|gb|AW498208.1|AW498208
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCNCAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|15590113|gb|BI674729.1|BI674729
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|21987232|gb|BQ778760.1|BQ778760
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|211130311|gb|FL066378.1|FL066378
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|32828788|gb|CD968466.1|CD968466
EST:     GTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|60354184|gb|DN221157.1|DN221157
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|30706031|gb|CD059006.1|CD059006
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|87156435|gb|DY401224.1|DY401224
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|60347341|gb|DN214314.1|DN214314
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|32829808|gb|CD969486.1|CD969486
EST:     ACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: ACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|149106143|gb|EE291820.2|EE291820
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|60347158|gb|DN214131.1|DN214131
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|31611983|gb|CD568605.1|CD568605
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|38671702|gb|CD219303.2|CD219303
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|74243940|gb|DT651854.1|DT651854
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|78081691|gb|DV510103.1|DV510103
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|7137614|gb|AW499182.1|AW499182
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|76285099|gb|DV024667.1|DV024667
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|211354953|gb|FL243593.1|FL243593
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|9255123|gb|BE345591.1|BE345591
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|60346405|gb|DN213378.1|DN213378
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|78080233|gb|DV508645.1|DV508645
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|78107599|gb|DV526017.1|DV526017
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|5006027|gb|AI712089.1|AI712089
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCCCAAAGNCTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|24769483|gb|CA404612.1|CA404612
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTC--                         -AGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|211130310|gb|FL066377.1|FL066377
EST:     TGTTCCCACAAAGACTGCTCTTSAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: TGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|24765720|gb|CA400879.1|CA400879
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|37377085|gb|CF625114.1|CF625114
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTTCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|78080443|gb|DV508855.1|DV508855
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCCCTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|211379488|gb|FL165247.1|FL165247
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|16919381|gb|BM074163.1|BM074163
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|60356569|gb|DN223542.1|DN223542
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|89249519|gb|DY621305.1|DY621305
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|8666106|gb|BE186922.1|BE186922
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|211354951|gb|FL243591.1|FL243591
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACT
EST: gi|15590463|gb|BI675079.1|BI675079
EST:     AAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCCCTGGATATTCTCGCTGAGAGACTT
genomic: AAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
EST: gi|60355754|gb|DN222727.1|DN222727
EST:     GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAG                         GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT
genomic: GTTCACCAGCTATTATTACGTACCGTGTTCCCACAAAGACTGCTCTTCAGgtcccccccc ... tctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTT