Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGTCTCTCCTTGAGCAATCACTAAGTCACTCCAAGGTCCCTGGAACTAGAGAAATAGTGCAACATCTGTTTCGTGGCAGTGTATCTCATGTAACAAGgtactgactatgcgtatgaagctgttcatattttctttgctgtttgaggcttggattttgtactgttagagagctaagctttaatctgctagaacatttt...

Basic information

species Zea mays
transcript GRMZM2G376074_T01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32932408|gb|CF037220.1|CF037220
EST:     AGAGAAATAGTGCAACATCTGTTTCGTGGCAGTGTATCTCATGTAACAAG                         GTGCTCATCATGTGGAAAGGATTCAGCAGCATCTTCAAAATCTGAAGACTT
genomic: AGAGAAATAGTGCAACATCTGTTTCGTGGCAGTGTATCTCATGTAACAAGgtactgacta ... tattcataagGTGCTCATCATGTGGAAAGGATTCAGCAGCATCTTCAAAATCTGAAGACTT
EST: gi|32933527|gb|CF038339.1|CF038339
EST:     AGAGAAATAGTGCAACATCTGTTTCGTGGCAGTGTATCTCATGTAACAAG                         GTGCTCATCATGTGGAAAGGATTCAGCAGCATCTTCAAAATCTGAAGACTT
genomic: AGAGAAATAGTGCAACATCTGTTTCGTGGCAGTGTATCTCATGTAACAAGgtactgacta ... tattcataagGTGCTCATCATGTGGAAAGGATTCAGCAGCATCTTCAAAATCTGAAGACTT