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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGATCTGCAAAAGCCACAGATGGAGCTGGATGGAAAGGCTTGCGCTGCTGTTGGTCAGAGTGGCCTCATGGCTCTTTATGATATGCTATTTACCCAAgtgtgtttgtgaacttgatatggaaatttgtcattagttcggtgccttgtccatatgtttctaatgtcgaccttcccgtgatgcag

Basic information

species Zea mays
transcript GRMZM2G375504_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G375504_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g38150.2 (Oryza sativa), 5'ss of exon 3
TGCTGATCTGCAAAAGCCACAGATGGAGCTGGATGGAAAGGCTTGCGCTGCTGTTGGTCAGAGTGGCCTCATGGCTCTTTATGATATGCTATTTACCCAAgtgtgtttgtgaacttgatatggaaatttgtc----attagttcggtgccttgtccatatgtttctaatgtcgaccttcccgtgatgcag
|||||||||||||||||||||||||||| | |||||||||||||| || ||||||||||||||||| || ||||||||||| |||||| | |||| |||||||||||| | |   ||  ||  || ||   |    || | |  | | | || |  || | ||| |||  | || ||||  |   |||||
TGCTGATCTGCAAAAGCCACAGATGGAGTTAGATGGAAAGGCTTGTGCCGCTGTTGGTCAGAGTGGACTGATGGCTCTTTACGATATGTTGTTTAACCAAgtgtgtttattagtctggcattcaacttcaacaaaaatgaataggttactttttgtatctttttgtaaccttgaacttcttgcattgcag

upper sequence: GRMZM2G375504_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA03G12240.1 (Glycine max), 5'ss of exon 4
TGCTGATCTGCAAAAGCCACAGATGGAGCTGGATGGAAAGGCTTGCGCTGCTGTTGGTCAGAGTGGCCTCATGGCTCTTTATGATATGCTATTTACCCAAgtgtgtttgtga--acttgatatggaaatttgtcattagttcggtgccttgtccatatgtttctaatgtcgaccttcccgtgatgcag----------------------------------------------
| ||||||| |||||||||||    ||||| |||||||| || ||||| |||||||| |||||| | ||||||||||| |||||||   | || | ||| ||  |      |  | || |  ||   |||  | || |   |  | | || |   | | ||  |    |  |  | |  | |||   |                                              
TTCTGATCTTCAAAAGCCACAAGGAGAGCTTGATGGAAAAGCATGCGCGGCTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATACCATGTTCAGCCAGgttggcacaaaactaattaagttgcttattcattatcatcacaatccattataagtgttttcttttccttaatttgcaagcgattttgttgtttcctccatattgacgctgataccagattttttgtggtgcag

upper sequence: GRMZM2G375504_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA01G24530.1 (Glycine max), 5'ss of exon 4
TGCTGATCTGCAAAAGCCACAGATGGAGCTGGATGGAAAGGCTTGCGCTGCTGTTGGTCAGAGTGGCCTCATGGCTCTTTATGATATGCTATTTACCCAAgtgtgtttgtgaacttgatatggaaatttgtcattagttcggtgccttgtccatatgtttctaatgtcgaccttcccgtgatgcag-------------------------------------------------------
| ||||||| |||||||||||    ||||| |||||||| || || || |||||||| |||||| | ||||||||||| |||||||   | || | ||| ||  |      ||  | |  ||   |||| | || |  ||  | |  | |   | | ||       |  |  | |      ||||                                                        
TTCTGATCTTCAAAAGCCACAAGAAGAGCTTGATGGAAAAGCATGTGCGGCTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATACCATGTTCAGCCAGgttgg--cacaaaactaagttgcttatttattatcatctcaattcaatataagtgttttctcttcctttatttactacatttgcatgtgaatttgttttttcctccatattgatgttgatacaagatttttcgtggtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71317105|gb|DR795236.1|DR795236
EST:     CTGTTGGTCAGAGTGGCCTCATGGCTCTTTATGATATGCTATTTACCCAA                         CTTGATGTGTCCTCCTCGTCA-CTTCTTGTGACAGATAGTGATTTTGAGAA
genomic: CTGTTGGTCAGAGTGGCCTCATGGCTCTTTATGATATGCTATTTACCCAAgtgtgtttgt ... cgtgatgcagCTTGATGTGTCCTCCTCG-CAACTTCTTGTGACAGATAGTGATTTTGAGAA