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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCTTAGTGTAATACTAGCCAAGGAAGATATGGCAGACGACGTTGATCTAGAAACTATAGCTAACCTGACAGAAGGGTACTCAGGCAGTGATCTCAAGgtatgatactaccgatgctagaattttttatggtacttatttttacaatcaaataatgattgttgttaacctcttgaatgtgattattttcag

Basic information

species Zea mays
transcript GRMZM2G370521_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G370521_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g22420.1 (Oryza sativa), 5'ss of exon 25
AATTCTTAGTGTAATACTAGCCAAGGAAGATATGGCAGACGACGTTGATCTAGAAACTATAGCTAACCTGACAGAAGGGTACTCAGGCAGTGATCTCAAGgtatgatactaccgatgctagaatt--------ttttatggtacttatttttacaatcaaataatgattgttgt-taacctcttgaatgtgattatttt-cag
||||||||| || |||||||| || |||||| ||||||| || || ||||| ||| || |||||| | |||| |||||||| || ||||||||||||||||||  |   |  |  |  ||||| |        |  | || || | |||  |  |||  |||  || ||||||  |   ||| ||   || || ||||| |||
AATTCTTAGCGTGATACTAGCTAAAGAAGATTTGGCAGATGATGTCGATCTTGAAGCTGTAGCTAGCTTGACTGAAGGGTATTCTGGCAGTGATCTCAAGgtactactgttgcattcatagaagtagttccactgctgtgatattgattcctcaaattgaatgttgcttgttgagttgactcctggccgtaatcatttttcag