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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTGAACACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTGCTACAGAGgtaatatgtcatgagtgaaagtttcatttgcatactgtttcatttaaggctcaccctaattctatggccagcggattgtgcatgtggccatgcaaacatt...

Basic information

species Zea mays
transcript GRMZM2G368908_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G368908_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os04g56646.1 (Oryza sativa), 5'ss of exon 6
GAGTTGAACACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTGCTACAGAGgtaatatgtcatgagtgaaagtttcatttgcatactgtttcatttaaggctcaccctaattctatggccagcggattgtgcatgtggccatgcaaacatt
||||||| || ||| | ||||| || ||||||||||| |||||||| ||||| ||||||||||||| |||  ||   | |  |  |  || |||   ||  ||||       |||||||   ||  ||      || |   ||| | |||  ||     
GAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAGgtaatatttcacaagaatatgcattttcagcctacaagttgctttattat--gccctaat---atatcct-----ttatcattgttgtcattaaag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60340869|gb|DN207842.1|DN207842
EST:     ACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTGAAGGGACTAGATGCAAGGCTCAGGGAG
genomic: ACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTGCTACAGAGgtaatatgtc ... gtcaaataagGTCACTAGCAAGCTTGCAGCCTTGAAGGGACTAGATGCAAGGCTCAGGGAG
EST: gi|60355241|gb|DN222214.1|DN222214
EST:     ACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTGAAGGGACTAGATGCAAGGCTCAGGGAG
genomic: ACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTGCTACAGAGgtaatatgtc ... gtcaaataagGTCACTAGCAAGCTTGCAGCCTTGAAGGGACTAGATGCAAGGCTCAGGGAG
EST: gi|60399723|gb|DN232533.1|DN232533
EST:     CCTTTTAAAGGGACGTAAAGGACACAACCATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTGAAGGGACTAGATGCAAGGCTCAGGGAG
genomic: CCTTTT-AAGGGACGTAAAGGACACAACCATAAGCACACTTGCTACAGAGgtaatatgtc ... gtcaaataagGTCACTAGCAAGCTTGCAGCCTTGAAGGGACTAGATGCAAGGCTCAGGGAG
EST: gi|108824177|gb|EC278185.1|EC278185
EST:     ACCTTTTAAGGGATGTAAAGGACACAACCATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTGAAGGGACTAGATGCAAGGCTCAGGGAG
genomic: ACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTGCTACAGAGgtaatatgtc ... gtcaaataagGTCACTAGCAAGCTTGCAGCCTTGAAGGGACTAGATGCAAGGCTCAGGGAG
EST: gi|32857775|gb|CD997456.1|CD997456
EST:     GGACACAACCATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTGAAGGGACTAGATGCAAGGCTCAGGGAG
genomic: GGACACAACCATAAGCACACTTGCTACAGAGgtaatatgtc ... gtcaaataagGTCACTAGCAAGCTTGCAGCCTTGAAGGGACTAGATGCAAGGCTCAGGGAG
EST: gi|87153027|gb|DY397816.1|DY397816
EST:     ACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTGAAGGGACTAGATGCAAGGCTCAGGGAG
genomic: ACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTGCTACAGAGgtaatatgtc ... gtcaaataagGTCACTAGCAAGCTTGCAGCCTTGAAGGGACTAGATGCAAGGCTCAGGGAG
EST: gi|16925720|gb|BM078788.1|BM078788
EST:     CATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTGAAGGGACTAGATGCAAGGCTCAGGGAG
genomic: CATAAGCACACTTGCTACAGAGgtaatatgtc ... gtcaaataagGTCACTAGCAAGCTTGCAGCCTTGAAGGGACTAGATGCAAGGCTCAGGGAG
EST: gi|110520623|gb|EE024807.1|EE024807
EST:     ACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTGAAGGGACTAGATGCAAGGCTCAGGGAG
genomic: ACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTGCTACAGAGgtaatatgtc ... gtcaaataagGTCACTAGCAAGCTTGCAGCCTTGAAGGGACTAGATGCAAGGCTCAGGGAG