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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattcatatctactttctttgtttgccccccatccccgtatcgaatgcagggtttgctctgtgtaaacccaacgttcttttattgtgcggtggctg...

Basic information

species Zea mays
transcript GRMZM2G361074_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G361074_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g47870.1 (Oryza sativa), 5'ss of exon 3
GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattcatatctactttctttgtttgccccccatccccgtatcgaatgcagggtttgctct--gtgtaaacccaacgttcttttattgtgcggtggctg--
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  |   |  |    |    |     | |   | ||  ||| |||||   | | | |  |||   |  || |   | |  ||||   |||  | |  
GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtaacattgcttcttcttaatctcccgttaattctaattctgtgccga-tgcagcagtagatgtaagtgctgattcagc---catgaattgcatggtttcagtt

upper sequence: GRMZM2G361074_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA12G32060.3 (Glycine max), 5'ss of exon 3
GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattcatatctactttctttgtttgccccccatccccgt-atcgaatgcagggtt-tgctctgtgtaaacccaacgttcttttattgtgcggtggctg
| || ||||||||||| |||||||| |||||||| |||||||| ||||| || |||||||||| | |    | |  | ||   | ||  ||    |    ||| ||    | ||    | |  | | | |  ||      | |  | | |  |  | || | 
GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctctgaagc--cctttaatattctcctgttaaatgcgtcattttgttcattcctgttttttttatctacttgttttcccctgaattagttggggatt

upper sequence: GRMZM2G361074_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ06425 (Selaginella moellendorffii), 5'ss of exon 2
----------------------------------------GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattcatatctactttctttgtttgccccccatccccgtatcgaatgcagggtttgctctgtgtaaacccaacgttcttttattgtgcggtggctg
                                        |||||||||||||||| |||||||| |||||||| ||||| || |||||||| || ||||||| ||        |  |  || | || |        |         ||||||       |||| |||  | |||                         
GACAACTGCGCGATTTGCCGGAATCACATCATGGATCTGTGCATCGAGTGCCAGGCAAACCAGGCCAGCGCCACGAGCGAAGAATGCACCGTTGCCTGGGgtaagagaagatgatcatagctctattggttttgtgac---------aatgcaaaacacactctttgtggatccag------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211305107|gb|FL162112.1|FL162112
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|71426824|gb|DR807874.1|DR807874
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211307131|gb|FL162129.1|FL162129
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|78085341|gb|DV513734.1|DV513734
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|148950950|gb|EC896587.2|EC896587
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211307122|gb|FL162120.1|FL162120
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGWTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211196752|gb|FL162102.1|FL162102
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|84979967|gb|DW530316.1|DW530316
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|33770787|gb|CF273081.1|CF273081
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|28187952|gb|CB179562.1|CB179562
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211305102|gb|FL162107.1|FL162107
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211309155|gb|FL162139.1|FL162139
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|37621951|gb|CF675004.1|CF675004
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCACTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|116823511|gb|EC867051.1|EC867051
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211307127|gb|FL162125.1|FL162125
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211305104|gb|FL162109.1|FL162109
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211305105|gb|FL162110.1|FL162110
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211307126|gb|FL162124.1|FL162124
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|76294370|gb|DV033938.1|DV033938
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211307136|gb|FL162134.1|FL162134
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGDHTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|28188123|gb|CB179733.1|CB179733
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGCCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|71426825|gb|DR807875.1|DR807875
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|32912934|gb|CF017746.1|CF017746
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211307124|gb|FL162122.1|FL162122
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|149085569|gb|EE175081.2|EE175081
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|78081690|gb|DV510102.1|DV510102
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211309154|gb|FL162138.1|FL162138
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211305110|gb|FL162115.1|FL162115
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211305106|gb|FL162111.1|FL162111
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211307132|gb|FL162130.1|FL162130
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211305100|gb|FL162105.1|FL162105
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211309153|gb|FL162137.1|FL162137
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211196753|gb|FL162103.1|FL162103
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|76908744|gb|DV163077.1|DV163077
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|37622025|gb|CF675078.1|CF675078
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|28187964|gb|CB179574.1|CB179574
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211307128|gb|FL162126.1|FL162126
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211307135|gb|FL162133.1|FL162133
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211305101|gb|FL162106.1|FL162106
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAACCA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|28188239|gb|CB179849.1|CB179849
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|149085568|gb|EE175080.2|EE175080
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211307123|gb|FL162121.1|FL162121
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|32915004|gb|CF019816.1|CF019816
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|101389549|gb|EB816709.1|EB816709
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211305108|gb|FL162113.1|FL162113
EST:     GCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: GCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211309151|gb|FL162135.1|FL162135
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|60395946|gb|DN228816.1|DN228816
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|4827489|gb|AI668181.1|AI668181
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211305113|gb|FL162118.1|FL162118
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211307133|gb|FL162131.1|FL162131
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|9952798|gb|BE639381.1|BE639381
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211307129|gb|FL162127.1|FL162127
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|78026763|gb|DV495150.1|DV495150
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211305114|gb|FL162119.1|FL162119
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211305112|gb|FL162117.1|FL162117
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211309152|gb|FL162136.1|FL162136
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|37375689|gb|CF624299.1|CF624299
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
EST: gi|211305111|gb|FL162116.1|FL162116
EST:     CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG                         GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA
genomic: CCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 172

GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 79

GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 78

GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 90

GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattca ... tattcttcagGAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGGgtatgattcatatctactttctttgtttgccccccatccccgtatcgaatgcagggtttgctctgtgtaaacccaacgttcttttattgtgcggtggctg

- - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcccccc