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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTAGGAGTTGGGAAGACCACTTCTCAACAAGAAATAAAGAAGGCGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctcaaccataaacatgaatgttttttttacctttcagactcaagcaatatttttatggatcttcctttttcatctaggcattggtgggagaag...

Basic information

species Zea mays
transcript GRMZM2G359599_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G359599_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g10220.1 (Oryza sativa), 5'ss of exon 2
ATTCTAGGAGTTGGGAAGACCACTTCTCAACAAGAAATAAAGAAGGCGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctcaaccataaacatgaatgttttttttacctttcagactcaagcaatatttttatggatcttcctttttcatctaggcattggtgggagaag
||  |||| |||| || |||  |||| || || |||||||||||||| |||||||| |||||  | || || || ||||| ||||||||||| |||||||||| ||||       |||        ||||||  |       |  | |||    |||| | |  ||    || ||   |   | ||             
ATCTTAGGGGTTGAGAGGACAGCTTCACAGCAGGAAATAAAGAAGGCTTATCACAAGTTGGCCTTACGTCTTCATCCAGACAAGAATCCTGGAGATGAGgtaggatcttgtttccaaa--------ttttttccat------ggattaagtgccatttgtctcaattgagctgttatgtgatgtcag------------

upper sequence: GRMZM2G359599_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA19G32480.1 (Glycine max), 5'ss of exon 2
ATTCTAGGAGTTGGGAAGACCACTTCTCAACAAGAAATAAAGAAGGCGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc----aaccataaacatgaatgttttttttacctttcagactcaagcaatatttttatggatcttcctttttcatctaggcattggtgggagaag--
  ||| || || | ||  ||  | ||||| || |||||||||||||||||  |||| |||||  |||| || ||||| |||||||| ||||| ||||| |  ||   ||    | ||  | |    |   |||||| ||      |   | ||    || |||| |   | ||  ||||      ||| || |       ||   
--TCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTACTACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAGgtcattcttctagccgaatatgccatcattttttatattgacaaatgttaattgctagtttttt---ttttttttttaataggagggatcgaatccgcaacct