1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTGAAACAAAGgttttttttttcaagatctgattctctcctgttaactggccatggccaggtgtcttttgttgatttcatttctcgcttaattttgcatgatcatgccatag
species | Zea mays |
transcript | GRMZM2G359397_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTGAAACAAAG GTGCTACCTGGAGTACATAATTTTGTGGCAACATTAATTGAAGGACGTGACEST: gi|31364673|gb|CD449028.1|CD449028
genomic: GCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTGAAACAAAGgttttttttt ... catgccatagGTGCTACCTGGAGTACATAATTTTGTGGCAACATTAATTGAAGGACGTGAC
EST: GCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTGAAACAAAG GTGCTACCTGGAGTACATAATTTTGTGGCAACATTAATTGAAGGACGTGACEST: gi|78119881|gb|DV538265.1|DV538265
genomic: GCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTGAAACAAAGgttttttttt ... catgccatagGTGCTACCTGGAGTACATAATTTTGTGGCAACATTAATTGAAGGACGTGAC
EST: GCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTGAAACAAAG GTGCTACCTGGAGTACATAATTTTGTGGCAACATTAATTGAAGGACGTGACEST: gi|93283884|gb|EB676148.1|EB676148
genomic: GCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTGAAACAAAGgttttttttt ... catgccatagGTGCTACCTGGAGTACATAATTTTGTGGCAACATTAATTGAAGGACGTGAC
EST: GCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTGAAACAAAG GTGCTACCTGGAGTACATAATTTTGTGGCAACATTAATTGAAGGACGTGAC
genomic: GCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTGAAACAAAGgttttttttt ... catgccatagGTGCTACCTGGAGTACATAATTTTGTGGCAACATTAATTGAAGGACGTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTGAAACAAAGgttttttttttcaagatctgattctctcctgttaactggccatggccaggtgtcttttgttgatttcatttctcgcttaattttgcatgatcatgccatag
- - - - - GCAAGA