1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGGACATTAAAGAACTTCAAGATGTTGAGACATTTCGACAATGCTTAATTGACGAGGATTTGCTGCCGCCACAGCATGACGATTATCACATGATGTTAAGgtacaacatttcgtgttcacagttttttttcttttcttttgaataaccttcaaaagacaggaagtttcttgttcgcaaggttttgatttctatttatgct...
species | Zea mays |
transcript | GRMZM2G355610_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GACGAGGATTTGCTGCCGCCACAGCATGACGATTATCACATGATGTTAAG GTTCCTAAAAGCACGGAAATTTGATGTTGAGAAAGCTAAGAATATGTGGTCEST: gi|211129916|gb|FL015856.1|FL015856
genomic: GACGAGGATTTGCTGCCGCCACAGCATGACGATTATCACATGATGTTAAGgtacaacatt ... tgcattgcagATTCCTAAAAGCACGGAAATTTGATGTTGAGAAAGCTAAGAATATGTGGTC
EST: GACGAGGAATTGCTGCCGCCACAGCATGACGATTATCACATGATGTTAAG GTTCCTAAAAGCACGGAAATTTGATGTTTGAGAA-GCTAAGAATATGTGGTEST: gi|211129914|gb|FL015854.1|FL015854
genomic: GACGAGGATTTGCTGCCGCCACAGCATGACGATTATCACATGATGTTAAGgtacaacatt ... tgcattgcagATTCCTAAAAGCACGGAAATTTGATGTT-GAGAAAGCTAAGAATATGTGGT
EST: ACGAGGATTTGCTGCCGCCACAGCATGACGATTATCACATNGATGTTAAG GTTCCTAAAAGCACGGAAAATTTGATGTTGAGAAAGCTAAGAATATGTGGEST: gi|67026420|gb|CO455169.1|CO455169
genomic: ACGAGGATTTGCTGCCGCCACAGCATGACGATTATCACAT-GATGTTAAGgtacaacatt ... tgcattgcagATTCCTAAAAGCACGGAAA-TTTGATGTTGAGAAAGCTAAGAATATGTGG
EST: GACGAGGATTTGCTGCCGCCACAGCATGACGATTATCACATGATGTTAAG ATTCCTAAAAGCACGGAAATTTGATGTTGAGAAAGCTAAGAATATGTGGTC
genomic: GACGAGGATTTGCTGCCGCCACAGCATGACGATTATCACATGATGTTAAGgtacaacatt ... tgcattgcagATTCCTAAAAGCACGGAAATTTGATGTTGAGAAAGCTAAGAATATGTGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGACATTAAAGAACTTCAAGATGTTGAGACATTTCGACAATGCTTAATTGACGAGGATTTGCTGCCGCCACAGCATGACGATTATCACATGATGTTAAGgtacaacatttcgtgttcacagttttttttcttttcttttgaataaccttcaaaagacaggaagtttcttgttcgcaaggttttgatttctatttatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaca