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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGAAGTTGAGGTGCAGGAGGCCAAGAGCACCCTCGACGCCAAGGTCACGACGATTGGCAACATCGTGCATGAGTCTGTGCCAGTCAGCGATGACGAGgtgacctagaaatttagttggtgtttgttctggctatttgctttccattgaagtaactgttagactgtagtgtgacatcctaaatattagctccactgtc...

Basic information

species Zea mays
transcript GRMZM2G355297_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G355297_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g37837.1 (Oryza sativa), 5'ss of exon 3
CAAAGAAGTTGAGGTGCAGGAGGCCAAGAGCACCCTCGACGCCAAGGTCACGACGATTGGCAACATCGTGCATGAGTCTGTGCCAGTCAGCGATGACGAGgtgacctagaaatttagttggtgtttgttctggctatttgctttccattgaagtaactgttagactgt--agtgtgacatcctaaatattagctccactgtc-
||| ||    |||||||||||||||||| |||| ||||| |||||| ||  ||||||||| ||||| |||||||| || || || ||||||||||||||||||   |  ||| |       || ||    |   |   |  |   ||||     |  | || | ||||  ||| ||  |   |      |  | |  |  |  
CAAGGAGACGGAGGTGCAGGAGGCCAAGGGCACGCTCGATGCCAAGCTCGTGACGATTGGAAACATTGTGCATGAATCCGTCCCTGTCAGCGATGACGAGgtgtgttgaaaagtgga---atgcttagatttcgtgactattgatcattagcacagtttttggtctgttaagtttgttagatttgcaggtttcccggcacttg