1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGGTTCACCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTTTACCACGGTgtgaatcccattgtctttaatgctataccatgcttttatgtatatcgttcacttgtaactcaaatacttgctggtttgatgtgtcaggtctcttccatgt...
species | Zea mays |
transcript | GRMZM2G353213_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTTTACCACGGT CTCT-TCCATGTTAAAGAGATATGCCATGCAACAAGCATTTAAGTCAATGAEST: gi|91055447|gb|EB165865.1|EB165865
genomic: GTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTTTACCACGGTgtgaatccca ... tcacttgttgCTAAATC--TGTTGCAGAGATATGCCATGCAACAAGCATTTAAGTCAATGA
EST: GTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTTTACCACGGT CTCT-TCCATGTTAAAGAGATATGCCATGCAACAAGCATTTAAGTCAATGAEST: gi|148945681|gb|EC890953.2|EC890953
genomic: GTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTTTACCACGGTgtgaatccca ... tcacttgttgCTAAATC--TGTTGCAGAGATATGCCATGCAACAAGCATTTAAGTCAATGA
EST: GTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTTTACCACGGT CTCT-TCCATGTTAAAGAGATATGCCATGCAACAAGCATTTAAGTCAATGAEST: gi|71448507|gb|DR829557.1|DR829557
genomic: GTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTTTACCACGGTgtgaatccca ... tcacttgttgCTAAATC--TGTTGCAGAGATATGCCATGCAACAAGCATTTAAGTCAATGA
EST: GTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTTTACCACGGT CTCT-TCCATGTTAAAGAGATATGCCATGCAACAAGCATTTAAGTCAATGA
genomic: GTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTTTACCACGGTgtgaatccca ... tcacttgttgCTAAATC--TGTTGCAGAGATATGCCATGCAACAAGCATTTAAGTCAATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTTCACCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCTGTGGCGTTTACCACGGTgtgaatcccattgtctttaatgctataccatgcttttatgtatatcgttcacttgtaactcaaatacttgctggtttgatgtgtcaggtctcttccatgt
- - - - - - - - - - TTGGAG