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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacgacttcctggcttgcgtcttgggtcgttggtttgtttttatgatgacccacctgtggtgcctactgcctaggagctgtaccaacggtagcaa...

Basic information

species Zea mays
transcript GRMZM2G348866_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G348866_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv06s0080g00860.t01 (Vitis vinifera), 5'ss of exon 3
GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacgacttcctggcttgcgtcttgggtcgttggtttgtttttatgatgacccacc-tgtggtgcctactgcctaggagctgtaccaacggtagcaa---
|||| |||||||||| ||||||||||| || ||||| ||||||||||| |||  | |   |||| |   |||     |   |||||  ||| |||||||  | |       | |  || ||  ||   |  |    |  |  | ||  ||    
GAACACTCAGCCCCGGTTCCAGTTCATTGTGATGAATCGGCGCAACACAGgttggca---cttcatttattgatcaataattcgttcttttatttttatttttatttttaattttttggctg-tgataataattcatttctgcagtttcattat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148969459|gb|EE020269.2|EE020269
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|76021487|gb|DT948657.1|DT948657
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|76932642|gb|DV173100.1|DV173100
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|211497316|gb|FL084186.1|FL084186
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAMCCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|76915823|gb|DV166138.1|DV166138
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|71434350|gb|DR815400.1|DR815400
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|50334180|gb|CO529306.1|CO529306
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|86468761|gb|DY235131.1|DY235131
EST:     GAACTCTCACCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|211500195|gb|FL084194.1|FL084194
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|101402261|gb|EB822718.1|EB822718
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|78073578|gb|DV502012.1|DV502012
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|211497318|gb|FL084188.1|FL084188
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|76286853|gb|DV026421.1|DV026421
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|78119406|gb|DV537790.1|DV537790
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGGGGAGGATCTCTTAAGTGATTTTGAATACGATCTTCACCCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|211497310|gb|FL084180.1|FL084180
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATGACGAGCTTCAACCT
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAAT-ACGAGCTTCAACCT
EST: gi|211497317|gb|FL084187.1|FL084187
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|211497311|gb|FL084181.1|FL084181
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|211500193|gb|FL084192.1|FL084192
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|148954829|gb|EC900302.2|EC900302
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|211497313|gb|FL084183.1|FL084183
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCT
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGG-TGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCT
EST: gi|71444517|gb|DR825567.1|DR825567
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|93013298|gb|EB638818.1|EB638818
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|101396950|gb|EB820400.1|EB820400
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|78111855|gb|DV530252.1|DV530252
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|71447775|gb|DR828825.1|DR828825
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|71449627|gb|DR830677.1|DR830677
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
EST: gi|71447776|gb|DR828826.1|DR828826
EST:     GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG                         ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC
genomic: GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacga ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAGCTTCAACCTC