1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGAAAATATAGTAAAAACGGCAAAGGAGAGACTTAAGCCATCAACATTAGCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAGgtaaccttaaagtccaagagtaagtgcagtaaaggaatagccaaataggttgacaaataactccacatttgttactgtggagagatcgtgcagtagcttt...
species | Zea mays |
transcript | GRMZM2G348578_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAG TTCGGGAACATTCCTTAGTGCTAATGAAGACCCAACTGAAACCCTTGCGGAEST: gi|211499061|gb|FL037730.1|FL037730
genomic: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAGgtaaccttaa ... tgccaaacagTTCGGGAACATTCCTTAGTGCTAATGAAGACCCAACTGAAACCCTTGCGGA
EST: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAG TTCGGGAACATTCCTTAGTGCTAATGAAGACCCAACTGAAACCCTTGCGGAEST: gi|4776430|gb|AI665433.1|AI665433
genomic: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAGgtaaccttaa ... tgccaaacagTTCGGGAACATTCCTTAGTGCTAATGAAGACCCAACTGAAACCCTTGCGGA
EST: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAG TTCGGGAACATTCCTTAGTGCTAATGAAGACCCAACTGAAACCCTTGCGGAEST: gi|148950085|gb|EC895620.2|EC895620
genomic: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAGgtaaccttaa ... tgccaaacagTTCGGGAACATTCCTTAGTGCTAATGAAGACCCAACTGAAACCCTTGCGGA
EST: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAG TTCGGGAACATTCCTTAGTGCTAATGAAGACCCAACTGAAACCCTTGCGGAEST: gi|78027558|gb|DV495945.1|DV495945
genomic: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAGgtaaccttaa ... tgccaaacagTTCGGGAACATTCCTTAGTGCTAATGAAGACCCAACTGAAACCCTTGCGGA
EST: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAG TTCGGGAACATTCCTTAGTGCTAATGAAGACCCAACTGAAACCCTTGCGGAEST: gi|78110902|gb|DV529300.1|DV529300
genomic: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAGgtaaccttaa ... tgccaaacagTTCGGGAACATTCCTTAGTGCTAATGAAGACCCAACTGAAACCCTTGCGGA
EST: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAG TTCGGGAACATTCCTTAGTGCTAATGAAGACCCAACTGAAACCCTTGCGGAEST: gi|78080612|gb|DV509024.1|DV509024
genomic: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAGgtaaccttaa ... tgccaaacagTTCGGGAACATTCCTTAGTGCTAATGAAGACCCAACTGAAACCCTTGCGGA
EST: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAG TTCGGGAACATTCCTTAGTGCTAATGAAGACCCAACTGAAACCCTTGCGGAEST: gi|211076164|gb|FL369889.1|FL369889
genomic: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAGgtaaccttaa ... tgccaaacagTTCGGGAACATTCCTTAGTGCTAATGAAGACCCAACTGAAACCCTTGCGGA
EST: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAG TTCGGGAACATTCEST: gi|26457639|gb|CA829222.1|CA829222
genomic: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAGgtaaccttaa ... tgccaaacagTTCGGGAACATTC
EST: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAG TTCGGGAACATTCCTTAGTGCTAATGAAGACCCAACTGAAACCCTTGCGGAEST: gi|148941852|gb|EC886830.2|EC886830
genomic: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAGgtaaccttaa ... tgccaaacagTTCGGGAACATTCCTTAGTGCTAATGAAGACCCAACTGAAACCCTTGCGGA
EST: CCCTGAGGAAAGGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAG TTCGGGAACATTCCTTAGTGCTAATGAAGACCCAACTGAAACCCTTGCCGAEST: gi|149009320|gb|EE041386.2|EE041386
genomic: CCCTGAGGAAAGG-AGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAGgtaaccttaa ... tgccaaacagTTCGGGAACATTCCTTAGTGCTAATGAAGACCCAACTGAAACCCTTGCGGA
EST: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAG TTCGGGAACATTCCTTAGTGCTAATGAAGACCCAACTGAAACCCTTGCGGAEST: gi|211533533|gb|FL409962.1|FL409962
genomic: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAGgtaaccttaa ... tgccaaacagTTCGGGAACATTCCTTAGTGCTAATGAAGACCCAACTGAAACCCTTGCGGA
EST: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAG TTCGGGAACATTCCTTAGTGCT
genomic: GCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAGgtaaccttaa ... tgccaaacagTTCGGGAACATTCCTTAGTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAAAATATAGTAAAAACGGCAAAGGAGAGACTTAAGCCATCAACATTAGCCCTGAGGAAAGGAGAAACCGCAGAGAGTACAAAAGGAATCAGGACAAGgtaaccttaaagtccaagagtaagtgcagtaaaggaatagccaaataggttgacaaataactccacatttgttactgtggagagatcgtgcagtagcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaataa