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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGTTGGAGATTTAGTGTGGCTCCATGAGAATGATGAGATACCATGTGATCTTGTTCTCATTGGCACTTCTGATCGACAAGGCATTTGTTATGTTGAGgtaaatgtttttttctcaaacacacaggaaagctgcgtatcattatattaaaaagaaagaaaggggtttagaacctgtaaagcccaacacactcacaaat...

Basic information

species Zea mays
transcript GRMZM2G347447_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G347447_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g28460.1 (Oryza sativa), 5'ss of exon 3
ACATGTTGGAGATTTAGTGTGGCTCCATGAGAATGATGAGATACCATGTGATCTTGTTCTCATTGGCACTTCTGATCGACAAGGCATTTGTTATGTTGAGgtaaatgtttttttctcaaacacacag---gaaagctgcgta-tcattatattaaa---aagaaagaaaggggtttagaacctgtaaagcccaacacactcacaaat
 ||||||||| || ||||||||||  || ||||||||||||||||||||||||||||||| || || ||||||||||  || ||||| |||||||||||||||||||   || |    |||   |||     ||  ||| |  |   ||| || |      | |   |  ||| |||  |   |||         |           
CCATGTTGGAAATATAGTGTGGCTTTATCAGAATGATGAGATACCATGTGATCTTGTTCTTATAGGAACTTCTGATCCTCAGGGCATCTGTTATGTTGAGgtaaatgaagttattcacaactagcagttaataacttgcattcttcctatgtttatttcctggacctatagggattaataatagtagcatgtgggatgtc-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93013258|gb|EB638778.1|EB638778
EST:     ATCTTGTTCTCATTGGCACTTCTGATCGACAAGGCATTTGTTATGTTGAG                         ACTGCTGCTTTGGATGGTGAAACTGACTTGAAAACAAGAACCATTCCTCCA
genomic: ATCTTGTTCTCATTGGCACTTCTGATCGACAAGGCATTTGTTATGTTGAGgtaaatgttt ... gttgcttcagACTGCTGCTTTGGATGGTGAAACTGACTTGAAAACAAGAACCATTCCTCCA