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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGCGCGCCGCCGCGGTTCCTCATCATCGACGACGGCTGGCAGCAGATCGCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcattgcacgcatcgcatttctctgatcaatcatggctggctgccagcccgccgcagtttccagacgctcaccaaaactggttgatcgcttccag

Basic information

species Zea mays
transcript GRMZM2G340656_T05
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71443980|gb|DR825030.1|DR825030
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|101387216|gb|EB815625.1|EB815625
EST:     GCCTCCGAGAACAAGCCCGACCCCAAAGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|76934842|gb|DV174047.1|DV174047
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|71327950|gb|DR800617.1|DR800617
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|76916827|gb|DV166568.1|DV166568
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|50328136|gb|CO523262.1|CO523262
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|76908536|gb|DV162989.1|DV162989
EST:     GAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|148938319|gb|EC882626.2|EC882626
EST:     CTCCGAGAAACAAGCCCGACCCCCAACGTCGCCGTCCAGGAGGGCGGGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: CTCCGAG-AACAAGCCCGA-CCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|78112322|gb|DV530716.1|DV530716
EST:     CCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: CCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|88757683|gb|DY541824.1|DY541824
EST:     CCTCCGAGAACAAGCCCGACCCCAAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: CCTCCGAGAACAAGCCCGACCCC-AACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|78111075|gb|DV529472.1|DV529472
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|76918557|gb|DV167349.1|DV167349
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|89755782|gb|DY686073.1|DY686073
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|93284604|gb|EB676868.1|EB676868
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|78090686|gb|DV519060.1|DV519060
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|76283759|gb|DV023327.1|DV023327
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|149206727|gb|ES702323.1|ES702323
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|89250508|gb|DY622294.1|DY622294
EST:     CCGACCCCAACGTCCCCGTCCAGGAGGGCGGGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: CCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|149075702|gb|EE164246.2|EE164246
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|89252678|gb|DY624464.1|DY624464
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|94474570|gb|EB703528.1|EB703528
EST:     GAGATCAACCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|149043267|gb|EE047327.2|EE047327
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|86470641|gb|DY237011.1|DY237011
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|71764826|gb|DR962763.1|DR962763
EST:     GCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|84969318|gb|DW467758.1|DW467758
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|88756978|gb|DY541119.1|DY541119
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|78082364|gb|DV510776.1|DV510776
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|86472132|gb|DY238502.1|DY238502
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
EST: gi|78118867|gb|DV537251.1|DV537251
EST:     GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCA                         ATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA
genomic: GCCTCCGAGAACAAGCCCGACCCCAACGTCGCCGTCCAGGAGGGCGCGCAgtacgtgcat ... tcgcttccagATTCGCCAGCCGGCTGACCGGGATCAAGGAGAACACCAAGTTCCAGACCAA