1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACGGCATCGCCTCTGACTCCGTCGCCAACATGAAGTCCAGAGGCGACGACGACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAGgtgtcttgtatcgctcatcatggtcatttaggcatgcatcgacatgaacagggtgagtgtgacctagctcgtcgtcgctttggcag
species | Zea mays |
transcript | GRMZM2G328908_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAG CTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCAEST: gi|18650231|gb|BM499050.1|BM499050
genomic: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAGgtgtcttgta ... gctttggcagCTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCA
EST: GGGCTCAGATAGCCAAGGAAATCAG CTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCAEST: gi|148991813|gb|EE033399.2|EE033399
genomic: GGGCTCAGATAGCCAAGGAAATCAGgtgtcttgta ... gctttggcagCTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCA
EST: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAG CTCCGGCGACAEST: gi|4647713|gb|AI622788.1|AI622788
genomic: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAGgtgtcttgta ... gctttggcagCTCCGGCGACA
EST: CAGATAGCCAAGGAAATCAG CTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCAEST: gi|149040130|gb|EE046781.2|EE046781
genomic: CAGATAGCCAAGGAAATCAGgtgtcttgta ... gctttggcagCTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCA
EST: CAGATAGCCAAGGAAATCAG CTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCAEST: gi|16919363|gb|BM074154.1|BM074154
genomic: CAGATAGCCAAGGAAATCAGgtgtcttgta ... gctttggcagCTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCA
EST: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAG CTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCAEST: gi|110219083|gb|EC900981.1|EC900981
genomic: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAGgtgtcttgta ... gctttggcagCTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCA
EST: TCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAG CTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCAEST: gi|13490371|gb|BG517135.1|BG517135
genomic: TCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAGgtgtcttgta ... gctttggcagCTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCA
EST: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAG CTCCGGCGACAGGGGGCTCAAGCEST: gi|32849587|gb|CD989268.1|CD989268
genomic: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAGgtgtcttgta ... gctttggcagCTCCGGCGACAGGGGGCTCAAGC
EST: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAG CTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCAEST: gi|116820958|gb|EC864226.1|EC864226
genomic: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAGgtgtcttgta ... gctttggcagCTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCA
EST: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAG CTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCAEST: gi|149081398|gb|EE170514.2|EE170514
genomic: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAGgtgtcttgta ... gctttggcagCTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCA
EST: ACTGCCTTCTTTCCCCTCGG-CACTGGGCTCAGATAGCCAAGGAAATCAG CTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGEST: gi|148934032|gb|EC878040.2|EC878040
genomic: ACTGCCTTCTT-CCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAGgtgtcttgta ... gctttggcagCTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATG
EST: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAG CTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCAEST: gi|13126121|gb|BG316691.1|BG316691
genomic: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAGgtgtcttgta ... gctttggcagCTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCA
EST: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAG CTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCAEST: gi|148996082|gb|EE035341.2|EE035341
genomic: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAGgtgtcttgta ... gctttggcagCTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCA
EST: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAG CTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCAEST: gi|13490410|gb|BG517174.1|BG517174
genomic: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAGgtgtcttgta ... gctttggcagCTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCA
EST: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAG CTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCAEST: gi|148934031|gb|EC878039.2|EC878039
genomic: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAGgtgtcttgta ... gctttggcagCTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCA
EST: ACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAAGGAA-TCAG CTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGEST: gi|13126546|gb|BG317116.1|BG317116
genomic: ACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAA-GGAAATCAGgtgtcttgta ... gctttggcagCTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATG
EST: TGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAG CTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCAEST: gi|149040129|gb|EE046780.2|EE046780
genomic: TGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAGgtgtcttgta ... gctttggcagCTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGATCCCTCATGAGAAGCA
EST: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAG CTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGA
genomic: GACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAGgtgtcttgta ... gctttggcagCTCCGGCGACAGGGGGCTCAAGCCTCTGTTCGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGGCATCGCCTCTGACTCCGTCGCCAACATGAAGTCCAGAGGCGACGACGACTGCCTTCTTCCCCTCGGGCACTGGGCTCAGATAGCCAAGGAAATCAGgtgtcttgtatcgctcatcatggtcatttaggcatgcatcgacatgaacagggtgagtgtgacctagctcgtcgtcgctttggcag
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