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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCGACGCGGTTCAGGTTCACCCACGAGACTTCCTTCGTGAGGCAGCATATGAATGTGCTGAACAAGTTCCCAGCATCATTCTACATCgtaataagattgaattctaagcatcattcgatctaatatatatgctagctagctacagcaggtcgatagactgacgacgacgatcatatgcag

Basic information

species Zea mays
transcript GRMZM2G325653_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G325653_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g09050.1 (Oryza sativa), 5'ss of exon 2
ACCCGACGCGGTTCAGGTTCACCCACGAGACTTCCTTCGTGAGGCAGCATATGAATGTGCTGAACAAGTTCCCAGCATCATTCTACATCgtaataagattgaattctaagcatcattcga----tctaatat-atatgctagctagctacagcaggtcgatagactgacgacgacgatcatatgcag-------------------------
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ATCCGACGAAGTTCAGATTTACTCACGAGACGTCGTTCGTCAGGCAGCACATGAACGTGCTGAACAAGACGCCGGCGTCGTTCTACATTgtaa---gatcgatctgtcagctcggttcaccatttctgacaagaaaaaccaact-gccacaagaagacgagaaattcagttcgtttgacatgaatttcctctctgatgatcgtcaaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12047203|gb|BF729342.1|BF729342
EST:     GCTGAACAAGTTCCCAGCATCATTCTACATC                         AGCAACTTCTTCCGGCAGTTCTTCAGGTCCGTGAGGCAGGCAGACTACTGC
genomic: GCTGAACAAGTTCCCAGCATCATTCTACATCgtaataagat ... tcatatgcagAGCAACTTCTTCCGGCAGTTCTTCAGGTCCGTGAGGCAGGCAGACTACTGC
EST: gi|78179418|gb|DV549791.1|DV549791
EST:     TGAGGCAGCATATGAATGTGCTGAACAAGTTCCCAGCATCATTCTACATC                         AGCAACTTCTTCCGGCAGTTCTTCAGGTCCGTGAGGCAGGCAGACTACTGC
genomic: TGAGGCAGCATATGAATGTGCTGAACAAGTTCCCAGCATCATTCTACATCgtaataagat ... tcatatgcagAGCAACTTCTTCCGGCAGTTCTTCAGGTCCGTGAGGCAGGCAGACTACTGC