1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAGAACCCAAGGGGAATACTTATTTCTCCAGGACCTGgtaagtttaatcttattgaatatcgcgagtgtttaagcttctttgggtgtaataaaatactttcatatgtgttctgtag
species | Zea mays |
transcript | GRMZM2G325131_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAAGAACCCAAGGGGAATACTTATTCCTCCAGGACCTG GTGAACCACTAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCCEST: gi|33099441|gb|CF059401.1|CF059401
genomic: GAAGAACCCAAGGGGAATACTTATTTCTCCAGGACCTGgtaagtttaa ... tgttctgtagGTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCC
EST: GAAGAACCCAAGGGGAATGCTTATTTCTCCAGGACCTG GTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCCEST: gi|18660207|gb|BM500741.1|BM500741
genomic: GAAGAACCCAAGGGGAATACTTATTTCTCCAGGACCTGgtaagtttaa ... tgttctgtagGTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCC
EST: GAAGAACCCAAGGGGAATACTTATTTCTCCAGGACCTG GTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCCEST: gi|33099920|gb|CF059880.1|CF059880
genomic: GAAGAACCCAAGGGGAATACTTATTTCTCCAGGACCTGgtaagtttaa ... tgttctgtagGTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCC
EST: GAAGAACCCAAGGGGAATACTTATTTCTCCCAGGACCTG GTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCCEST: gi|33099846|gb|CF059806.1|CF059806
genomic: GAAGAACCCAAGGGGAATACTTATTTCT-CCAGGACCTGgtaagtttaa ... tgttctgtagGTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCC
EST: GAAGAACCCAAGGGGAATACTTATTTCTCCCAGGACCTG GTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCCEST: gi|33099031|gb|CF058991.1|CF058991
genomic: GAAGAACCCAAGGGGAATACTTATTTCT-CCAGGACCTGgtaagtttaa ... tgttctgtagGTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCC
EST: GAAGAACCCAAGGGGAATACTTATTTCTCCCAGGACCTG GTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCCEST: gi|211412147|gb|FL109911.1|FL109911
genomic: GAAGAACCCAAGGGGAATACTTATTTCT-CCAGGACCTGgtaagtttaa ... tgttctgtagGTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCC
EST: GAAGAACCCAAGGGGAATACTTATTTCTCCAGGACCTG GTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCCEST: gi|33099524|gb|CF059484.1|CF059484
genomic: GAAGAACCCAAGGGGAATACTTATTTCTCCAGGACCTGgtaagtttaa ... tgttctgtagGTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCC
EST: GAAGAACCCAAGGGGAATACTTATTTCTCCCAGGACCTG GTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCCEST: gi|33099508|gb|CF059468.1|CF059468
genomic: GAAGAACCCAAGGGGAATACTTATTTCT-CCAGGACCTGgtaagtttaa ... tgttctgtagGTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCC
EST: GAAGAACCCAAGGGGAATACTTATTTCTCCAGGACCTG GTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCCEST: gi|86469587|gb|DY235957.1|DY235957
genomic: GAAGAACCCAAGGGGAATACTTATTTCTCCAGGACCTGgtaagtttaa ... tgttctgtagGTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCC
EST: GAAGAACCCAAGGGGAATACTTATTTCTCCAGGACCTG GTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCCEST: gi|33100076|gb|CF060036.1|CF060036
genomic: GAAGAACCCAAGGGGAATACTTATTTCTCCAGGACCTGgtaagtttaa ... tgttctgtagGTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCC
EST: GAAGAACCCAAGGGGAATACTTATTTCTCCAGGACCTG GTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCCEST: gi|110215812|gb|EC897710.1|EC897710
genomic: GAAGAACCCAAGGGGAATACTTATTTCTCCAGGACCTGgtaagtttaa ... tgttctgtagGTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCC
EST: CCCAGGGGGAATACTTATTTCTCCAGGACCTG GTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCCEST: gi|113701050|gb|EE678554.1|EE678554
genomic: CCCAAGGGGAATACTTATTTCTCCAGGACCTGgtaagtttaa ... tgttctgtagGTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCC
EST: GAAGAACCCAAGGGGAATACTTATTTCTCCAGGACCTG GTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCCEST: gi|33100338|gb|CF060298.1|CF060298
genomic: GAAGAACCCAAGGGGAATACTTATTTCTCCAGGACCTGgtaagtttaa ... tgttctgtagGTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCC
EST: GAAGAACCCAAGGGGAATACTTATTTCTCCAGGACCTG GTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCCEST: gi|33099759|gb|CF059719.1|CF059719
genomic: GAAGAACCCAAGGGGAATACTTATTTCTCCAGGACCTGgtaagtttaa ... tgttctgtagGTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCC
EST: GAAGAACCCAAGGGGAATACTTATTTCTCCCAGGACCTG GTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCCEST: gi|33099556|gb|CF059516.1|CF059516
genomic: GAAGAACCCAAGGGGAATACTTATTTCT-CCAGGACCTGgtaagtttaa ... tgttctgtagGTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCC
EST: GAAGAACCCAAGGGGAATACTTATTTCTCCAGGACCTG GTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCC
genomic: GAAGAACCCAAGGGGAATACTTATTTCTCCAGGACCTGgtaagtttaa ... tgttctgtagGTGAACCACAAGATTCGGGAATATCATTGCAGACTGTTCTTGAATTAGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAACCCAAGGGGAATACTTATTTCTCCAGGACCTGgtaagtttaatcttattgaatatcgcgagtgtttaagcttctttgggtgtaataaaatactttcatatgtgttctgtag
AAGAAC