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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAAGTTAGAAGTATTTACAAAAGAGGTCATTCGCTTTGGAAATCGTTGCAAGGATCCTCAGTGGCATAACTTGGACTGCTACTTTGAAAAgtatagtttttttctcagtacctgagtttgtggacgtgtttactttaggctactaaatttttttctgtttgtattccattag

Basic information

species Zea mays
transcript GRMZM2G320615_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G320615_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g35530.1 (Oryza sativa), 5'ss of exon 4
GGAAAAGTTAGAAGTATTTACAAAAGAGGTCATTCGCTTTGGAAATCGTTGCAAGGATCCTCAGTGGCATAACTTGGACTGCTACTTTGAAAAgtatagtttttttctcagtacctgagtttgtggacgtgtttactttaggctactaaatttttttctgtttgtattccattag
|||| |||||||| | ||| ||||||| ||  |||| |||||||||||||||||| ||||||| ||||| | ||||||| |||||||||||||||  |||||  ||       | ||  |||   || | ||||| |||| |  ||||| || |||| ||| |  |||  | |||
GGAAGAGTTAGAAATCTTTTCAAAAGAAGTTGTTCGATTTGGAAATCGTTGCAAGAATCCTCAATGGCACAGCTTGGACCGCTACTTTGAAAAgtgcagtttgatttctgc--cttgtatttaatgaag-gtttattttaaggcactaatttattttttgtattgattatactag

upper sequence: GRMZM2G320615_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA08G00670.1 (Glycine max), 5'ss of exon 3
GGAAAAGTTAGAAGTATTTACAAAAGAGGTCATTCGCTTTGGAAATCGTTGCAAGGATCCTCAGTGGCATAACTTGGACTGCTACTTTGAAAAgtatagtttttttctcagtacctgagtttgtggacgtgtttacttt---aggctactaaatttttttctgtt-tgtattccattag-------------------------
|||  ||||  |||| ||| |  | ||||| ||||| |||||||||||||  ||||||||||||||||| ||||||||| | |||||||| |||||   | |   |   | |  || | ||  |  | || || |  ||   |||  |  |||||||   || |  ||| |||  |  |                         
GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgta--atatgaattgtactcactcaattcatctaagttttcagctttacaggaaaacaaattttagcctttcatgttttcattctgacccatcttttattgtaaattttag

upper sequence: GRMZM2G320615_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA06G16680.1 (Glycine max), 5'ss of exon 2
GGAAAAGTTAGAAGTATTTACAAAAGAGGTCATTCGCTTTGGAAATCGTTGCAAGGATCCTCAGTGGCATAACTTGGACTGCTACTTTGAAAAgta---tagttt---ttttctcagtac--ctgagtttgtggacgtgtttactttaggct---actaaatttttttctg-tttgtattc-cattag---------
| |  ||||  | || ||| |  | ||||| ||||| |||||||||||||  ||| ||||||||||||| ||| | ||| | |||||||| |||||   ||  ||    |  |||| | |  || |  ||     | | || |    | | |   ||| |  ||| ||||| | |||| |  ||||           
GCAGGAGTTGAATGTTTTTTCTGATGAGGTGATTCGTTTTGGAAATCGTTCAAAGAATCCTCAGTGGCACAACCTAGACCGTTACTTTGAGAAgtaatataaattgtactcactcaattcaactaacctttcattcatcttcaaaaaaagatttaacttatatttattctgatctgtacttgcattgtaaattgtag

upper sequence: GRMZM2G320615_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA04G38370.1 (Glycine max), 5'ss of exon 3
GGAAAAGTTAGAAGTATTTACAAAAGAGGTCATTCGCTTTGGAAATCGTTGCAAGGATCCTCAGTGGCATAACTTGGACTGCTACTTTGAAAAgta---tagttt---ttttctcagtacctgagtttgtggacgtgtttactttaggctactaaatttttttc-tgtttgtattccattag--------------------
| |  ||||  |||| ||| |  | ||||| ||||| |||||||||||||  ||| ||||||||||||| ||||| ||  | |||||||| |||||   ||  ||    |  |||| | |         |  |    | | ||  |   || | |   ||| |  | ||| |  |    |                      
GCAGGAGTTGAAAGTTTTTTCTGATGAGGTGATTCGTTTTGGAAATCGTTCAAAGAATCCTCAGTGGCACAACTTAGAGCGTTACTTTGAGAAgtaatataaattgtactcactcaattcaactagcctttcattcatcttctaaaaaatatttagcctttcttatatttattctgagctgtactttcattttaaattttag

upper sequence: GRMZM2G320615_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA05G33040.1 (Glycine max), 5'ss of exon 3
GGAAAAGTTAGAAGTATTTACAAAAGAGGTCATTCGCTTTGGAAATCGTTGCAAGGATCCTCAGTGGCATAACTTGGACTGCTACTTTGAAAAgta---tagttt---ttttctcagt--acctgagtttgtggacgt--------gtttactttaggctactaaattttt-ttctg-tttgtattccattag---------
|||  ||||  |||| ||| |  | ||||| ||||| |||||||||||||  ||||||||||||||||| ||||||||| | |||||||| |||||   ||  ||    |  |||| |  | || ||||| | | | |            | ||||| ||   | |||||  |||||     | ||  |||           
GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatataaattgtactcactcaattcatctaagtttttagcctttcgggaaaacaaattttagcctttcatattttcattctgacccatcttttattgtaaattttag

upper sequence: GRMZM2G320615_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv18s0076g00260.t01 (Vitis vinifera), 5'ss of exon 3
GGAAAAGTTAGAAGTATTTACAAAAGAGGTCATTCGCTTTGGAAATCGTTGCAAGGATCCTCAGTGGCATAACTTGGACTGCTACTTTGAAAAgtatagtttttttctcagtacctgagtttgtggacgtgtttactttaggctactaaa-------------tttttttctgt-ttgtattccattag-----
|||| |  |  || | ||| |   ||| ||  | || ||||| ||||| || || |||||||||||||| ||||||||| | |||||||| |||||    |  | |     |  || | ||        ||| |  |||| |  |  |||             | || || |||  ||| ||| || |      
GGAAGAACTGAAAATTTTTTCTGGAGAAGTGGTCCGTTTTGGGAATCGATGTAAAGATCCTCAGTGGCACAACTTGGACCGTTACTTTGAGAAgtaatcctgatgttatcttgtctaacttacgctttatgtgtgatttaagacatcaaagatgaggttctcatgttcttttgtgctgtcttctatgattttag