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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGCTCGTCTTCTACAGGGGCCGCGCGCCCAACGGCCACAAGTCCGACTGGATCATGCACGAGTACCGCCTAGAGACCACCGAGAACGGGACCGCCCCTgtacgtaagcttgcctgcttgatgcctagctgaacaacagatctcgagcatgccattcaggctgacagcatttgcttcttcctgttgcccgtcgaatggcggttcag

Basic information

species Zea mays
transcript GRMZM2G315140_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G315140_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g42970.1 (Oryza sativa), 5'ss of exon 2
GACGCTCGTCTTCTACAGGGGCCGCGCGCCCAACGGCCACAAGTCCGACTGGATCATGCACGAGTACCGCCTAGAGACCACCGAGAACGGGACCGCCCCTgtacgta-agcttgcctgcttgatgccta--gctgaacaacagatctcgagcatgccattcaggctgacagcatttgcttcttcctgttgcccgtcgaatggcggttcag
||| ||||||||||||| |||||| || ||||| ||||| ||||| |||||||||||||||||||||||||| ||||||| ||| ||||| ||| | |||||| | | |  ||   || |||     |    | |  ||| | |     | | | ||  | | | |  ||   | |  ||  || | |   |   | |||| |       
GACACTCGTCTTCTACAAGGGCCGTGCCCCCAATGGCCAGAAGTCGGACTGGATCATGCACGAGTACCGCCTCGAGACCAACGAAAACGGCACCACACCTgtatgcatatatttgatgtttggaatttgctccggtccaataaaaaggtaccgtacc--ttatggtaccaaattgttttttatcatttgatctaac-aatgcc-------

upper sequence: GRMZM2G315140_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
GACGCTCGTCTTCTACAGGGGCCGCGCGCCCAACGGCCACAAGTCCGACTGGATCATGCACGAGTACCGCCTAGAGACCACCGAGAACGGGACCGCCCCTgtacgtaagcttgcctgcttgatgcctagctgaacaacagatctcgagcatgccattcaggctgacagcatttgcttcttcctgttgcccgtcgaatggcggttcag----
       || ||||||| |||||| |||||  | ||||| ||| ||||||||||||||||||||| ||| |||||  | || |  | | ||    || | ||    | |   | |  | |    | |  |  | |  |  |    |  | || |  |   | |  |||  || || |   |     ||  | |     |  | ||      
------GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGA--CGACGGCAACCAGGCATTCCGCGGTTTCGATgtacgtcgccgttccacatttccaaccccctcacagtgttcgtgtccctttcgat--cagtgtt-gcattaccagaaagcttgcctcggagatgctcccagat