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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAAGTATTTCTCAGATGATTGGCCGACTAATGCATCAAAGTTAGCCTACGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttcattctttgttgttccatgcagaatcaaacatcactatcatagcatcgggatttgaaatcttatgatatgttgttgcttttaccaatttcaa...

Basic information

species Zea mays
transcript GRMZM2G314679_T05
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G314679_T05 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g21250.1 (Oryza sativa), 5'ss of exon 3
GTAAAGTATTTCTCAGATGATTGGCCGACTAATGCATCAAAGTTAGCCTACGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttcattctttgttgttccatgcagaatcaaacatcactatcatagcatcgggatttgaaatctt-atgatatgttgttgcttttac-caatttcaa-
|| || || ||||| ||||||||| | | |||||| |||||||| ||||  ||||||||||| |||||||||||||| ||||||||||||||  ||||||||||||     |     ||||| ||||    |||   | ||  || ||| |||   |  ||||  |  || |  || ||      |    |  |   ||||  
GTGAAATACTTCTCGGATGATTGGTCTAGTAATGCGTCAAAGTTGGCCTTTGAAAAGTCTGTCTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAGgtatttcattcttagctttgttgcatgtgttatc---cctccataccatggcacatgcttttgccactttgacaatttggcacatcacacattctgcttcatg

upper sequence: GRMZM2G314679_T05 (Zea mays), 5'ss of exon 3
lower sequence: Vv09s0002g01710.t01 (Vitis vinifera), 5'ss of exon 2
GTAAAGTATTTCTCAGATGATTGGCCGACTAATGCATCAAAGTTAGCCTACGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttcattctttgttgttccatgcagaatcaaacatcactatcatagcatcgggatttgaaatcttatgatatgttgtt-gcttttaccaatttcaa-------
|| || |||| ||| ||||||||||| || |||||  |||| ||||| |  |||||||| || || |||||||||| |||||||||||| ||||| || |||||  ||       |   |||  || |  ||||||   |  || |  | |  |  |  ||    || |||  |||  ||||| | | ||  || | | ||       
GTCAAATATTACTCCGATGATTGGCCAACAAATGCTGCAAAATTAGCTTTTGAAAAGTCCGTCTTCACTAAAACTCAAAAGACAAATGCTCGGACTGAGGgtataatta------taaagttgaattctaaatcaatagtttctcttgttgtttttg--ttcaggattttagaataatttgttagttcttggcattcttaaaatgttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31357552|gb|CD441909.1|CD441909
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|211184335|gb|FL140041.1|FL140041
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGKACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|60356728|gb|DN223701.1|DN223701
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|211181937|gb|FL140035.1|FL140035
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGAT
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGAT
EST: gi|87157301|gb|DY402090.1|DY402090
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|7137590|gb|AW499170.1|AW499170
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|211184344|gb|FL140050.1|FL140050
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|15313043|gb|BI478532.1|BI478532
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|211184341|gb|FL140047.1|FL140047
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|5296305|gb|AI783075.1|AI783075
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|22819508|gb|BU499598.1|BU499598
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|56382683|gb|CV985352.1|CV985352
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|211184337|gb|FL140043.1|FL140043
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|211344197|gb|FL190861.1|FL190861
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|211184338|gb|FL140044.1|FL140044
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|62550301|gb|DN830721.1|DN830721
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|5928724|gb|AW055941.1|AW055941
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|5901227|gb|AW042327.1|AW042327
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGGTATATTGTCGGTTACAAGGTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|6227104|gb|AW155808.1|AW155808
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|211181941|gb|FL140039.1|FL140039
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCG
EST: gi|211181938|gb|FL140036.1|FL140036
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|211184339|gb|FL140045.1|FL140045
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|33103253|gb|CF063213.1|CF063213
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|211181939|gb|FL140037.1|FL140037
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCNCGGACAGAAG                         CTGAGATAACATTG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTG
EST: gi|211181940|gb|FL140038.1|FL140038
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
EST: gi|211184343|gb|FL140049.1|FL140049
EST:     CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAG                         CTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG
genomic: CGAAAAGTCTGTTTTTACTAAAACTCTAAAGACAAATGCACGGACAGAAGgtatttttca ... ttctttgcagCTGAGATAACATTGTTTGATGGTTATATTGTCGTTTACAAGTTTGTACATG