Sequence
atgc intronic sequence ATGC exonic sequenceCGGGAACCCTGGCCTAATGTTTCGGAAAATGCAAAAGATTTAGTTCGACACATGTTGGAGCCTGATCCAAAGCTCAGGCTAACTGCAAAGCAGGTTCTTGgtatgtcatcactgtccagtttgatttggcattcctgatgtatttccatttctgaggtggtcaatatgcttagtaaacactattgttgtcctattggtct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G311220_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g61590.1 (Oryza sativa), 5'ss of exon 3
CGGGAACCCTGGCCTAATGTTTCGGAAAATGCAAAAGATTTAGTTCGACACATGTTGGAGCCTGATCCAAAGCTCAGGCTAACTGCAAAGCAGGTTCTTGgtatgtcat-cactgtccagtttgatttggcattcctgatgtatttccatttctgaggtggtcaatatgcttagtaaacactattgttgtccta--ttggtct
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CGCGAACCCTGGCCAAATGTTTCAGAAAATGCTAAAGATTTGGTTCGACGCATGTTGGAGCCTGATCCAAAACTCAGGTTAACTGCAAAGCAAGTTCTTGgtacgttttacatagcactacaaaaaaatagacacctgatat-tctacttgcgtgcatcataccataaaat-atcaaattcaatgatcattcaaacttgatt-
upper sequence: GRMZM2G311220_T03 (Zea mays), 5'ss of exon 3
lower sequence: AT3G51850.1 (Arabidopsis thaliana), 5'ss of exon 3
CGGGAACCCTGGCCTAATGTTTCGGAAAATGCAAAAGATTTAGTTCGACACATGTTGGAGCCTGATCCAAAGCTCAGGCTAACTGCAAAGCAGGTTCTTGgtatgt------catcactgtccagtttgatttggcatt---cctgatgtatttccatttctgaggtggtcaatatgcttagtaaacact-------attgttgtcctattggtct------------------------------
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AGGGAACCGTGGCCAAACATTTCTGAGACCGCTAAGAATCTAGTCAGACAAATGTTAGAGCCTGATCCAAAGCGTCGGCTGACTGCAAAGCAAGTGCTTGgtacatagaagctacctttgccttatgctctttctctctgcatctgttattatctcttttcccaattacttcac-tgatctggagatactccaaaagattttttttatgcttattcctgcttttgttattgtttctcatttgctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60338816|gb|DN205789.1|DN205789EST: CATGTTGGAGCCTGATCCAAAGCTCAGGCTAACTGCAAAGCAGGTTCTTG AACATCATTGGCTTCAAAATGCAAAGAAGGCTCCTAATGTCCCTCTTGGAG
genomic: CATGTTGGAGCCTGATCCAAAGCTCAGGCTAACTGCAAAGCAGGTTCTTGgtatgtcatc ... aaaaatacagAACATCATTGGCTTCAAAATGCAAAGAAGGCTCCTAATGTCCCTCTTGGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGGGAACCCTGGCCTAATGTTTCGGAAAATGCAAAAGATTTAGTTCGACACATGTTGGAGCCTGATCCAAAGCTCAGGCTAACTGCAAAGCAGGTTCTTGgtatgtcatcactgtccagtttgatttggcattcctgatgtatttccatttctgaggtggtcaatatgcttagtaaacactattgttgtcctattggtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG