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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCTTTGCTGGTATCATTGTCATCTGTCTAGATGAACTCCTACAGAAAGGCTATGGTTTGGGATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaagcatattaagggcctgtttggttcactacctcagttgccacactttgcctaacttttctgcctaaggttagttattcaattcgaactactaacctt...

Basic information

species Zea mays
transcript GRMZM2G307252_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G307252_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g17830.1 (Oryza sativa), 5'ss of exon 2
TTTTCTTTGCTGGTATCATTGTCATCTGTCTAGATGAACTCCTACAGAAAGGCTATGGTTTGGGATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaagcatattaagggcctgtttggttcactacctcagttgccacactttgcctaacttttctgcctaaggttagttattcaattcgaactactaacctt
||||||||||||| |||||||| ||||| || |||||||| || |||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||| ||||    || | |  | || |    | | ||  ||| ||||    | |||                                        
TTTTCTTTGCTGGCATCATTGTTATCTGCCTTGATGAACTTCTCCAGAAAGGCTATGGTTTGGGTTCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatcttaaatttctttatcttacattcttactgatgtgacattttgttacaatttag--------------------------------------

upper sequence: GRMZM2G307252_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g17840.1 (Oryza sativa), 5'ss of exon 2
TTTTCTTTGCTGGTATCATTGTCATCTGTCTAGATGAACTCCTACAGAAAGGCTATGGTTTGGGATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaagcatattaagggcctgtttggttcactacctcagttgccacactttgcctaacttttctgcctaaggttagttattcaattcgaactactaacctt
||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||| ||||| || ||  |||| |||||||| ||||||||||||||||  |||   | | |||   |  ||      | ||  ||| |||| |  | |||                                        
TTTTCTTTGCTGGCATCATTGTCATCTGTCTTGATGAACTTCTCCAGAAAGGCTATGGTTTGGGTTCTGGCATTTCATTGTTTATTGCTACCAATATCTGgtaagcatcctaaa--cttctttctcttgct------gatgtgacattttgtcgcaatttag--------------------------------------

upper sequence: GRMZM2G307252_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA13G34370.1 (Glycine max), 5'ss of exon 3
TTTTCTTTGCTGGTATCATTGTCATCTGTCTAGATGAACTCCTACAGAAAGGCTATGGTTTGGGATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaagcatattaagggcctgtttggttcactacc-----tcagttgccacactttgcctaacttttctgcctaaggttagttattcaattcgaactactaacctt---------------------------------
| |  ||||| ||||| ||||| || ||||||||||| || || || ||||| |||||| |||| ||||| || || || |||||||| || ||||||||||||   | |      ||    ||    | | ||     | | ||   |   | |   |   | ||||  | |  | ||   |    |||  ||| | | | ||                                  
TATGTTTTGCGGGTATAATTGTGATATGTCTAGATGAGCTTCTTCAAAAAGGATATGGTCTGGGGTCTGGAATATCCCTATTCATTGCAACCAATATCTGgtaaatttctacttttccctgatgagatatttccagcttttaattataatgttcttgttg--tcttctagcaactgctaaccaggatattt-aaccatttatctaatacttaaatggaattcccttttcgtttttcag

upper sequence: GRMZM2G307252_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA12G35990.1 (Glycine max), 5'ss of exon 3
TTTTCTTTGCTGGTATCATTGTCATCTGTCTAGATGAACTCCTACAGAAAGGCTATGGTTTGGGATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaagcatattaagggcctgtttggttcactacctcagttgccacactttgcctaac-ttttctgcctaaggttagttattcaattcgaactactaacctt---------------------------------
| |  ||||| ||||| ||||| || ||||||||||| || || || ||||| |||||| |||| ||||| || || || ||||| || || ||||||||||||   | |       |  | |  ||| || | |    | | | | | | | |    | ||||  | |  | ||   |     ||  ||| | | | |                                   
TCTGTTTTGCGGGTATAATTGTGATATGTCTAGATGAGCTTCTTCAAAAAGGATATGGTCTGGGGTCTGGAATTTCCCTTTTCATAGCAACTAATATCTGgtaaatttctaccctaacgatatatttc-ctgcttgtaat-ctataatgttcttgttgtcttctagcaactgctaaccagaatgttt-aaccatttatcaaatacttaaaaggaattcccttgtcatttttcag

upper sequence: GRMZM2G307252_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA06G32680.1 (Glycine max), 5'ss of exon 3
TTTTCTTTGCTGGTATCATTGTCATCTGTCTAGATGAACTCCTACAGAAAGGCTATGGTTTGGGATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaagcatattaagggcctgtttggttcactacctcagttgccacactttgcctaacttttctgcctaaggttagt----tattcaattcgaactactaacctt--------------------------
| |  ||||| ||||| ||||| || ||| | ||||| ||||| || ||||||||||| ||||||||||| || |||||||||||||| || ||||| |||||||  |  |     | |  ||  ||   ||  | | || |  ||    || |   | |  |  | |   ||||     | |    |      ||  || |||                          
TATGTTTTGCGGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAAAAAGGCTATGGCTTGGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttattgtcccttaatttattgtataattta-ttccagcatcgagcttgtgtctcatagcaactattagcaaagtgtatggtcttttataaaaaacttatatgaattctctgattacattgcag

upper sequence: GRMZM2G307252_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA12G17950.1 (Glycine max), 5'ss of exon 3
TTTTCTTTGCTGGTATCATTGTCATCTGTCTAGATGAACTCCTACAGAAAGGCTATGGTTTGGGATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaag----catattaagggcctgtttggttcactacctcagttgccacactttgccta---acttttctgcctaaggt-tagttattcaattcgaact---actaacctt---------------
| |  ||||| ||||| ||||| || ||| | ||||| ||||| |||||||| |||||||| |||||||| || |||||||||||||| || ||||| |||||||    | | ||||   | |      || | | | ||| |   |     |  | ||   ||| ||   |  |  || | ||  || |     ||||   |  ||   |               
TCTGTTTTGCAGGTATTATTGTGATATGTTTGGATGAGCTCCTTCAGAAAGGGTATGGTTTAGGATCTGGAATTTCTCTGTTCATTGCCACTAATATATGgtaagttttcttgttaataacttac--aatttattccatcattgagcttgtgtctcatagaaactattgaacaaactgtatggtcttttatcaaaaacttgtatgaattctctcattatgttgcag

upper sequence: GRMZM2G307252_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv19s0014g01020.t01 (Vitis vinifera), 5'ss of exon 3
TTTTCTTTGCTGGTATCATTGTCATCTGTCTAGATGAACTCCTACAGAAAGGCTATGGTTTGGGATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaagcatattaagggcctgtttgg--ttcactacctcagttgccacactttgcctaacttttctgcctaaggttagttattcaatt-cgaactactaacctt-----------------------------------------------------------------------
| |  ||||||||||||||||| || ||| |||||||||| || |||||||| |||||  | || ||||| || ||||| ||||| || || |||||||||| ||||| |        |  | ||  ||   |   | | ||  ||   |   | |    | | ||   ||| ||   |||  |    | | |  ||                                                                             
TCTGTTTTGCTGGTATCATTGTGATATGTTTAGATGAACTTCTGCAGAAAGGATATGGGCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgtgagcatctggttctttttctgggattttttttattaatttatcattttgaacatggaatatttgaagaagctttactatctagcagccagcgtctggtgaatgtggtctcatttctgggttgaccattaactctactgtcaaatagtgacaattgttttgatcaattggcag

upper sequence: GRMZM2G307252_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv00s1338g00020.t01 (Vitis vinifera), 5'ss of exon 2
TTTTCTTTGCTGGTATCATTGTCATCTGTCTAGATGAACTCCTACAGAAAGGCTATGGTTTGGGATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaagcatattaagggcctgtttgg---ttcactacctcagttgccacactttgcctaacttttctgcctaaggttagttattcaatt-cgaactactaacctt---------------------------------------------------------------------------------
| | |||||||||||||||||| || ||| |||||||||| || |||||||| |||||  | || ||||| || ||||| ||||| || || |||||||||| ||||| |        |  | ||   ||   ||  | | ||   |   |   | |    | | ||   ||| ||  |  |  |    | |    ||                                                                                       
TCTGCTTTGCTGGTATCATTGTGATATGTTTAGATGAACTTCTGCAGAAAGGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgttagcatctggttctttttctgggattttttttaattaatttatgattttgaacatggaatatttgaagaagctttatcgtctagcagccagtgtctggtgaatggtgggcccattttctgggtgaaccattaactctactgtcaagtagtgattgctaatgaattgttttgatcaattggcag

upper sequence: GRMZM2G307252_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv00s2574g00010.t01 (Vitis vinifera), 5'ss of exon 2
TTTTCTTTGCTGGTATCATTGTCATCTGTCTAGATGAACTCCTACAGAAAGGCTATGGTTTGGGATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaagcatattaagggcctgtttgg---ttcactacctcagttgccacactttgcctaacttttctgcctaaggttagttattcaatt-cgaactactaacctt---------------------------------------------------------------------------------
| | |||||||||||||||||| || ||| |||||||||| || |||||||| |||||  | || ||||| || ||||| ||||| || || |||||||||| ||||| |        |  | ||   ||   ||  | | ||   |   |   | |    | | ||   ||| ||  || |  |    | |    ||                                                                                       
TCTGCTTTGCTGGTATCATTGTGATATGTTTAGATGAACTTCTGCAGAAAGGATATGGCCTTGGCTCTGGAATTTCTCTTTTCATAGCAACTAATATCTGgttagcatctgcttctttttctgggattttttttaattaatttatgattttgaacatggaatatttgaagaagctttattgtctagcagccagtgtctggtgaatggtgggcccattttctgggtggaccattaactctactgtcaagtagtgattgctaatgaattgttttgatcaattggcag

upper sequence: GRMZM2G307252_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S323_56V6.1 (Physcomitrella patens), 5'ss of exon 3
TTTTCTTTGCTGGTATCATTGTCATCTGTCTAGATGAACTCCTACAGAAAGGCTATGGTTTGGGATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaagcata-----ttaagggcctgtttggttcactacctcagttgccacactttgcctaacttttctgcctaaggttagttattcaattcgaactactaacctt
| ||||| ||||| |||||||| |||||||| |||||  | |||||||| || |||||  ||||||| || || ||||| |||||||| || ||||||||||| ||  |      |    |||||      | |  |    |||||  |  |  |     |||  ||||| |  |  | |  ||         |   |||     
TCTTCTTCGCTGGAATCATTGTTATCTGTCTTGATGAGTTGCTACAGAAGGGTTATGGACTGGGATCCGGAATTTCTCTTTTCATTGCCACCAATATCTGgtaggctcagttttctttatgcctgcaattcttagaaatgaagttgagagccaatat---actcgtctgcttgcgaattgaaatctggagtttatctctatgt--

upper sequence: GRMZM2G307252_T02 (Zea mays), 5'ss of exon 2
lower sequence: EFJ15673 (Selaginella moellendorffii), 5'ss of exon 2
TTTTCTTTGCTGGTATCATTGTCATCTGTCTAGATGAACTCCTACAGAAAGGCTATGGTTTGGGATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaagcatattaagggcctgtttggttcactacctcagttgccacactttgcctaacttttctgcctaaggttagttattcaattcgaactactaacctt
| ||||| ||||||||||||||||| || || ||||||||||| ||||| || || ||  | ||||| || |||||  ||||||| || || || ||||||| ||      |    ||| ||   ||  |  |     ||    |  ||    | ||| |                                        
TCTTCTTCGCTGGTATCATTGTCATTTGCCTGGATGAACTCCTCCAGAAGGGATACGGGCTTGGATCGGGAATCTCGTTGTTCATAGCCACCAACATCTGgtgag------agaaaccttttccttttccagctctgattatttctattg---tgactgtgacag-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32807859|gb|CD960093.1|CD960093
EST:     GATCTGGCATCTCTCTGTTCATTGCTACGAATATCTG                         TGAGAATATCATCTGGAAGGCGTTTAGCCCAACAACCATCAACAGTGGGCG
genomic: GATCTGGTATCTCTCTGTTCATTGCTACGAATATCTGgtaagcatat ... gtccatgtagTGAGAATATCATCTGGAAGGCGTTTAGCCCAACAACCATCAACAGTGGGCG