1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGACGACCACGACGTGGCCAAGTCCGTCGTCGAGTTCGCCGCGCACGGCGCCGTAGAGAAGCTCGTCGTCGGCGCTAGCGCTAGGGGCGGCTTCGTCAGgtgagtgggcgactgactcaatggccgtcctgtgccgatgcatacgtgtccgatcgatccatcgtcgcaccgttcctcgtcaagcatcgcgacgctatccaggcctggtttggtttgtgaatgaag
species | Zea mays |
transcript | GRMZM2G301647_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCCGTAGAGAAGCTCGTCGTCGGCGCTAGCGCTAGGGGCGGCTTCGTCAG GTTCAAGGCGGAAATCTGCAACACCATCTCCAAGTCCGCGCCCGACTTCTGEST: gi|76912619|gb|DV164822.1|DV164822
genomic: GCCGTAGAGAAGCTCGTCGTCGGCGCTAGCGCTAGGGGCGGCTTCGTCAGgtgagtgggc ... gtgaatgaagGTTCAAGGCGGAAATCTGCAACACCATCTCCAAGTCCGCGCCCGACTTCTG
EST: GCCGTAGAGAAGCTCGTCGTCGGCGCTAGCGCTAGGGGCGGCTTCGTCAG GTTCAAGGCGGAAATCTGCAACACCATCTCCAAGTCCGCGCCCGACTTCTGEST: gi|78076030|gb|DV504464.1|DV504464
genomic: GCCGTAGAGAAGCTCGTCGTCGGCGCTAGCGCTAGGGGCGGCTTCGTCAGgtgagtgggc ... gtgaatgaagGTTCAAGGCGGAAATCTGCAACACCATCTCCAAGTCCGCGCCCGACTTCTG
EST: GCCGTAGAGAAGCTCGTCGTCGGCGCTAGCGCTAGGGGCGGCTTCGTCAG GTTCAAGGCGGAAATCTGCAACACCATCTCCAAGTCCGCGCCCGACTTCTGEST: gi|160481517|gb|EY254349.1|EY254349
genomic: GCCGTAGAGAAGCTCGTCGTCGGCGCTAGCGCTAGGGGCGGCTTCGTCAGgtgagtgggc ... gtgaatgaagGTTCAAGGCGGAAATCTGCAACACCATCTCCAAGTCCGCGCCCGACTTCTG
EST: GCCGTAGAGAAGCTCGTCGTCGGCGCTAGCGCTAGGGGCGGCTTCGTCAG GTTCAAGGCGGAAATCTGCAACACCATCTCCAAGTCCGCGCCCGACTTCTGEST: gi|89761195|gb|DY689309.1|DY689309
genomic: GCCGTAGAGAAGCTCGTCGTCGGCGCTAGCGCTAGGGGCGGCTTCGTCAGgtgagtgggc ... gtgaatgaagGTTCAAGGCGGAAATCTGCAACACCATCTCCAAGTCCGCGCCCGACTTCTG
EST: GCCGTAGAGAAGCTCGTCGTCGGCGCTAGCGCTAGGGGCGGCTTCGTCAG GTTCAAGGCGGAAATCTGCAACACCATCTCCAAGTCCGCGCCCGACTTCTG
genomic: GCCGTAGAGAAGCTCGTCGTCGGCGCTAGCGCTAGGGGCGGCTTCGTCAGgtgagtgggc ... gtgaatgaagGTTCAAGGCGGAAATCTGCAACACCATCTCCAAGTCCGCGCCCGACTTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGACGACCACGACGTGGCCAAGTCCGTCGTCGAGTTCGCCGCGCACGGCGCCGTAGAGAAGCTCGTCGTCGGCGCTAGCGCTAGGGGCGGCTTCGTCAGgtgagtgggcgactgactcaatggccgtcctgtgccgatgcatacgtgtccgatcgatccatcgtcgcaccgttcctcgtcaagcatcgcgacgctatccaggcctggtttggtttgtgaatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC