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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGAGAAGAGACTTGAGGATCTGTTCACGGGACGTCCTTACGACATGCTTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGgtactgactgccttacgggctgctgtacctagcggattcattccactgatatgacacttttggactgcagttattgatatttctaaccagcattagattc...

Basic information

species Zea mays
transcript GRMZM2G300348_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G300348_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g51290.3 (Oryza sativa), 5'ss of exon 3
GTGGGAGAAGAGACTTGAGGATCTGTTCACGGGACGTCCTTACGACATGCTTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGgtactgactgccttacgggctgctgtacctagcggattcattccactgatatgacacttttggactgcagttattgatatttctaaccagcattagattc---------
|||||||||||| ||||| ||||| ||||| ||||| || ||||||||||||||||| || || |||||||||||||| | ||| || ||||| |||||||||   |||  ||    ||    || |  ||||| |   || | | |||| | | |||  | ||||  | |  ||| || | |  |             |         
GTGGGAGAAGAGGCTTGATGATCTCTTCACCGGACGCCCCTACGACATGCTTGATGCTGCACTTTCTGATACCATCTCCAAGTTTCCTATAGATATTCAGgta---actagct----ggtatatgcatatagcgaaa--atccaaatgatgtaatactgctagactatattggttgctaatccctatggattccctgcacatcgcaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32792805|gb|CD945041.1|CD945041
EST:     TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAG                         CCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGG
genomic: TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGgtactgactg ... gttgtggcagCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGG
EST: gi|91054433|gb|EB164851.1|EB164851
EST:     TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAG                         CCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGG
genomic: TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGgtactgactg ... gttgtggcagCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGG
EST: gi|74241172|gb|DT649086.1|DT649086
EST:     TGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCCATAGACATTCAG                         CCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAA
genomic: TGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCC-ATAGACATTCAGgtactgactg ... gttgtggcagCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAA
EST: gi|148946928|gb|EC892212.2|EC892212
EST:     TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAG                         CCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGA
genomic: TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGgtactgactg ... gttgtggcagCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGA
EST: gi|94472244|gb|EB701202.1|EB701202
EST:     TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAG                         CCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGG
genomic: TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGgtactgactg ... gttgtggcagCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGG
EST: gi|148995759|gb|EE034988.2|EE034988
EST:     TGATGCCGCTCTCTCTGATACCATCTNCA-GGTTCCCCATAGACATTCAG                         CCATTCAGGGACATGATTGAAGGGGATGAGGAGTGATC
genomic: TGATGCCGCTCTCTCTGATACCATCT-CAAGGTTCCCCATAGACATTCAGgtactgactg ... gttgtggcagCCATTCAGGGACATGATTGAAGGG-ATGAGGAGTGATC
EST: gi|78104640|gb|DV523058.1|DV523058
EST:     TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAG                         CCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGG
genomic: TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGgtactgactg ... gttgtggcagCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGG
EST: gi|76911964|gb|DV164511.1|DV164511
EST:     TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAG                         CCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGGAGACAAGG
genomic: TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGgtactgactg ... gttgtggcagCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGG
EST: gi|76916879|gb|DV166586.1|DV166586
EST:     TGATGCCGCTCTCTCTGATACCATCTCCAAGGTCCCCCATAGACATTCCG                         CCCTTCAGGGACATGATTGAAGGGATGAGGAGT
genomic: TGATGCCGCTCTCTCTGATACCATCTC-AAGGTTCCCCATAGACATTCAGgtactgactg ... gttgtggcagCCATTCAGGGACATGATTGAAGGGATGAGGAGT
EST: gi|71447701|gb|DR828751.1|DR828751
EST:     TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAG                         CCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGGAGACAAGG
genomic: TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGgtactgactg ... gttgtggcagCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGG
EST: gi|50325756|gb|CO520882.1|CO520882
EST:     TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAG                         CCATTCAGGGACATGATTGAAGGGGATGAGGA
genomic: TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGgtactgactg ... gttgtggcagCCATTCAGGGACATGATTGAAGGG-ATGAGGA
EST: gi|93016198|gb|EB641718.1|EB641718
EST:     TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAG                         CCATTCAGGGACATGATTGA
genomic: TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGgtactgactg ... gttgtggcagCCATTCAGGGACATGATTGA
EST: gi|67028270|gb|CO457019.1|CO457019
EST:     TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCC-ATAGACATTCAG                         CCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTANGAAGACAAG-
genomic: TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGgtactgactg ... gttgtggcagCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGG
EST: gi|71444100|gb|DR825150.1|DR825150
EST:     TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAG                         CCATTCAGGGACATGATTG
genomic: TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGgtactgactg ... gttgtggcagCCATTCAGGGACATGATTG
EST: gi|149073532|gb|EE161835.2|EE161835
EST:     TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAG                         CCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGG
genomic: TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGgtactgactg ... gttgtggcagCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGG
EST: gi|149075800|gb|EE164333.2|EE164333
EST:     TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAG                         CCATTCAGGGACACGATTGAAGGGATGAGGAGTGATCTTAGGA
genomic: TTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGgtactgactg ... gttgtggcagCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGA