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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaatgaccctgatattgtgttacttcgtagattttacttttacagctttgagttatgacctaccatgcatgatagttggtagaaatctttttggtttcaattttacatgtgctagtgcattaataacttctctttctctttctgcag

Basic information

species Zea mays
transcript GRMZM2G181359_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g54340.1 (Oryza sativa), 5'ss of exon 3
GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaatgaccctgatattgtgttacttcgtagattttacttttacagctttgagt-tatgacctaccatgcatgatagttg-gtagaaatctttttggtttcaattttacatgtgct---agtgcattaataacttctctttctctttctgcag
| || ||||||||||| || ||| |||| ||||| ||||| |||||| | || |||||||| ||||||||||||||||| |||||| | |||||||||    | |||    |       ||| |  |     ||  ||| | || |||| |  ||  |     ||||||||||   |  | |   |  |||   | || | |||||  | | ||   | |  | | | ||  | | || ||| || || ||
GGATTAAGGAGTCTGACACTGGGCTGGCACCACCCAGCCAATGGGATCTAGTATCAGATAAGCAGATGATGCAAGAAGAGCAACCGCTGCAAgtatatcgcttaacctatttccccgcctaccttctt--ccttgttttaatagttttgtgcctagcatacttcatgcatgatgcctaaggacttagatttcctgctttagttttatgtcttctgtgattttactgacaagatattttcctccttttgaag

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 3
GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaatgaccctgatattgtgttacttcgtagattttacttttacagctttgagttatgacctaccatgc--atgatagttggtagaaatctttttggtttcaattttacatgtgctagtgcattaataacttctctttctctttctgcag
|||| |||||||||||||| || |||||| |||| |||||||||||| | ||||| |||||||| |||||||| || || || ||  | || ||                |||||       || |||||||||  ||  |  ||||| | |  | |   |   |||  |||||  ||   | |                                                                
GTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgtc---------------atatt-------tttgtagattttgtttgaattgcttttaatatttatggatgttgctaatgatgattttaacag---------------------------------------------------------------

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 3
GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaatgaccctgatattgtgttacttcgtagattttacttttacagctttgagttatgacctaccatgcatg-atagttggtagaaatctttttggtttcaattttacatgtgctagtgcattaataacttctctttctctttctgcag
|||| |||||||||||||| || || ||| |||| |||||||||||| | ||||| |||||||| |||||||| || || || ||  | || ||            | |  | ||||     || || ||  |  ||||||    | || ||  |  |  |  |||  ||  || ||   ||                                                                 
GTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgt------------catatttttgtagattttggtcgaagt-gcttttaatattatgggt-gttgctaatgatgactgtgtatttaacag-----------------------------------------------------------------

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA07G05220.2 (Glycine max), 5'ss of exon 3
GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaatgaccctgatattgtgttacttcgtagattttacttttacagctttgagttatg----acctaccatgcatgatagttggtagaaatctttttggtttcaattttacatgtgctagtgcattaataacttctctttctctttctgcag
||||||||||||||||||| || || ||| |||| |||||||||||| | ||||| ||||| || |||||||| || || || ||  | || ||  ||||             |||| ||| || || || |||  | | |  | ||| |  | ||    |  | | |   ||| |  ||  | |||                                                               
GTATAAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtg-attat------------ttgttttatttagtggaatttgttctaagtgttttaatatttgcaggatttgctaactatggttatttattgaacag------------------------------------------------------------

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA16G01810.1 (Glycine max), 5'ss of exon 3
GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaatgaccctgatattgtgttacttcgtagattttacttttacagctttgagt-tatg-acctaccatgcatgatagttggtagaaatctttttggtttcaattttacatgtgctagtgcattaataacttctctttctctttctgcag
|||| |||||||||||||| || || ||  |||| |||||||||||| | ||||| ||||| || |||||||| ||||| || ||  | || |||      || |   |    |||| |||||| ||||| |||  |   |  | | ||  | | || |   |  |   |||    ||  | |||                                                               
GTATCAAGGAGTCTGATACTGGATTAGCAGCACCAAGCCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAAGAGCAGCCTCTTCAGgta------attatttt----ttgttttacttggtagaatttgttccaagtgttctgtatatctgcaggaattaactatggctatttattgaacag------------------------------------------------------------

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S49_256V6.1 (Physcomitrella patens), 5'ss of exon 3
GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaatgaccctgatattgtgttacttcgtagattttacttttacagctttgagttatgacctaccatgcatgatagttggtagaaatctttttggtttcaattttacatgtgctagtgcattaataacttctctttctctttctgcag
| || || ||||| || || || |||||    || || |||||||||||||| || || ||||| ||||||||||| ||||||||  | || |||| | ||    | || |  ||| ||     | |     |       | |||  || ||  ||   |  ||    || |   ||||| | |     |||   |  | || || |  | | ||  |||| |  |                    
GAATCAAAGAGTCAGACACTGGATTGGCAGTGCCCAGTCAGTGGGATTTGGTATCGGACAAACAAATGATGCAAGAGGAACAACCACTGCAGgtatgtaaa----ctctaaccttgggtgctggcatccggctcg---gcaaagcagtgcgtattg---ttgcagagttgctcactggtaaagactcacttgtagtttagttaactta-gtttgtttatta-tggcag------------------

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S152_13V6.2 (Physcomitrella patens), 5'ss of exon 3
GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaatgaccctgatattgtgttacttcgtagattttacttttacagctttgagttatgacctaccatgcatgatagttggtagaaatctttttggtttcaattttacatgtgctagtgcattaataacttctctttctctttctgcag
| || || ||||| || || ||| ||||    ||||| ||||||||| | || |||||||| |||||||||||||| |||||||| || || || || | |||  |    |  ||||   |||||      |   ||  | ||  | | | |  | |  || ||     ||  | |||||  ||  |  ||  ||  |||| |    |                                      
GAATCAAAGAGTCCGACACCGGGCTGGCAGTGCCTAGTCAGTGGGATCTCGTATCAGATAAGCAGATGATGCAAGAGGAACAACCATTGCAGgt-tagttaatcccagccaggttgtcaaacttctcgacatgatctcgtgcatttcttactcgt-atttagca-----gacgggtggtaataacttaatttatt--aattgtggcag--------------------------------------

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ13722 (Selaginella moellendorffii), 5'ss of exon 3
GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaatgaccctgatattgtgttacttcgtagattttacttttacagctttgagttatgacctaccatgcatgatagttggtagaaatctttttggtttcaattttacatgtgctagtgcattaataacttctctttctctttctgcag
| || |||||||| || || ||  | ||  | ||||||||||||||| |||| || ||||| || |||||||||||||| || ||  | ||||||  | | ||     |  | ||   |  |||  |    |||  | |  ||  |||| ||| ||                                                                                          
GGATCAAGGAGTCCGACACTGGTCTAGCAGCTCCTAGCCAGTGGGATCTGGTGTCTGATAAGCAAATGATGCAAGAAGAGCAGCCACTGCAAgtaagtgagat---ttttttcttcgatctcttgcttttcttttttctctcatgtttg-gttttggtag--------------------------------------------------------------------------------------

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ29161 (Selaginella moellendorffii), 5'ss of exon 3
GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaatgaccct----gatattgtgttacttcgtagattttacttttacagctttgagttatgacctaccatgcatgatagttggtagaaatctttttggtttcaattttacatgtgctagtgcattaataacttctctttctctttctgcag
| || |||||||| || || ||  | ||  | ||||||||||||||| |||| || ||||| || |||||||||||||| || ||  | ||||||    | ||     |    ||| |  || |  |     | |||   |||   ||                                                                                                      
GGATCAAGGAGTCCGACACTGGTCTAGCAGCTCCTAGCCAGTGGGATCTGGTGTCTGATAAGCAAATGATGCAAGAAGAGCAGCCACTGCAAgtaagggagatttttttcttcgatctattgcttttctcatgttttggttttggtag------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31998161|gb|CD661959.1|CD661959
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|148939474|gb|EC884049.2|EC884049
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|32909117|gb|CF013929.1|CF013929
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|148930441|gb|EE284947.2|EE284947
EST:     GGG-TTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|32835480|gb|CD975158.1|CD975158
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGT
EST: gi|148986522|gb|EE030276.2|EE030276
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|148941059|gb|EC885918.2|EC885918
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|28987578|gb|CB351704.1|CB351704
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|148940274|gb|EC885053.2|EC885053
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|211087536|gb|FL161883.1|FL161883
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|149102256|gb|EE287643.2|EE287643
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|148940455|gb|EC885254.2|EC885254
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|32833938|gb|CD973616.1|CD973616
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTA
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTA
EST: gi|148981623|gb|EE027766.2|EE027766
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|26457221|gb|CA828804.1|CA828804
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|149078548|gb|EE167330.2|EE167330
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|211087533|gb|FL161880.1|FL161880
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCC-TAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|211087537|gb|FL161884.1|FL161884
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|148933068|gb|EE285985.2|EE285985
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|67042393|gb|CO468648.1|CO468648
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|149004352|gb|EE039050.2|EE039050
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|148933233|gb|EC876884.2|EC876884
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|148943018|gb|EC888066.2|EC888066
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|148952264|gb|EC898073.2|EC898073
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|60401248|gb|DN234055.1|DN234055
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|149077295|gb|EE165971.2|EE165971
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|211087539|gb|FL161886.1|FL161886
EST:     GGGATTTGATTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCNAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|21390185|gb|BQ528234.1|BQ528234
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCA
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCA
EST: gi|148968071|gb|EE019406.2|EE019406
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|149040621|gb|EE046862.2|EE046862
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
EST: gi|149107887|gb|EE292247.2|EE292247
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAG                         GTGGCAAGGGGGACAAAGATCATAAACCCT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCT
EST: gi|211087532|gb|FL161879.1|FL161879
EST:     GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAA                         GTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 486

GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATCGCAAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 569

GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATCGCAAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 457

GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATCGCAAAA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 427

GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaa ... ctttctgcagGTGGCAAGGTGTACAAAGATCATAAGCCCTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATCGCAAAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATAAAGGAGTCTGATACAGGGTTGGCTCCACCTAGCCAGTGGGATTTGGTTTCAGATAAACAGATGATGCAAGAAGAACAACCGTTACAAgtatattaaatgaccctgatattgtgttacttcgtagattttacttttacagctttgagttatgacctaccatgcatgatagttggtagaaatctttttggtttcaattttacatgtgctagtgcattaataacttctctttctctttctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC