Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacagttttctccaatatgatgataactaccatgtagattttgaacagctcagtctgctagcctcttatgctttgttcctttgcttgcatatccatctatag

Basic information

species Zea mays
transcript GRMZM2G181151_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 3
AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacagttttctccaatatgatgataactaccatgtagattttgaacagctcagtctgctagcctcttatgctttgttcctttgcttgcatatc-catctatag
||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||  || |   | |  |              ||||     | ||||| |||||   | |||| ||||   |||| ||  |    | |   | ||| |  | |||  ||
AGTACAGGACTGTTTCTGGTGTGGCAGGACCTCTGGTTATCTTGGATAAAGTAAAGgtacgtgctactgttcct-------------ctac-----aaattttcaacagactaatctggtagcaagttatactgagcatttctttcttcatgtaacttcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33102148|gb|CF062108.1|CF062108
EST:     GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: gi|211182799|gb|FL070450.1|FL070450
EST:     GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: gi|33100953|gb|CF060913.1|CF060913
EST:     GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: gi|211182798|gb|FL070449.1|FL070449
EST:     GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: gi|8367004|gb|BE049949.1|BE049949
EST:     CGACTGTATCTGGTGTGGCCGGGCCTCTGGCTATCTTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATCGTAAACATCCGACTTGGAGATGGCACCACT
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: gi|9953932|gb|BE640515.1|BE640515
EST:     GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTATTG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
EST: gi|31664290|gb|CD573015.1|CD573015
EST:     GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT
genomic: GGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAGgtgtgtacag ... ccatctatagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCACT