1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGTCATACTGACTCCATTTGCTATAGCTATGGAAGGCCCTCAAATGTGGGCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaagaatttaatatttacagttttccttgcatagttgtcaagtatggtctccactcacattcgatgagatggctcgaaacacttcgggcatgttt...
species | Zea mays |
transcript | GRMZM2G180720_T04 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGNTGTCTG GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTAEST: gi|211127527|gb|FL066343.1|FL066343
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTAEST: gi|33102249|gb|CF062209.1|CF062209
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTAEST: gi|211127528|gb|FL066344.1|FL066344
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: GCTGCTGGTTGGCAAAAGGCTCTTGCAAAAGTTGGACCCAATGTTGTCTG GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCCAGGTGTCCCEST: gi|4647070|gb|AI622145.1|AI622145
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACC-AGGTGTCC-
EST: GCTGCTGGTTGGCAAAAGGTTCTTGCANAAGTTGGACCCAATGTTGTCTG GTGGATTGCTGCNCAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTAEST: gi|211128448|gb|FL066345.1|FL066345
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTAEST: gi|211039688|gb|FL176199.1|FL176199
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTAEST: gi|5030714|gb|AI714908.1|AI714908
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
EST: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTG GTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaaga ... gaatttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTCATACTGACTCCATTTGCTATAGCTATGGAAGGCCCTCAAATGTGGGCTGCTGGTTGGCAAAAGGCTCTTGCAGAAGTTGGACCCAATGTTGTCTGgtaaacaagaatttaatatttacagttttccttgcatagttgtcaagtatggtctccactcacattcgatgagatggctcgaaacacttcgggcatgttt
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT