1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTATGTTGTTATGGAGTATGTTAAGTGTGGGGAATTATTTGATTACATTGTTGAGAAAGGTAGGCTGCAGGAGGAAGAGGCTCGCCGTTTCTTCCAACAGgtgataccatttctttctgtttgtttgtgctacaattatgataaacttaggtttacaagaagacagcaaatcaaaacatctgtgatattcttctcaagtgtgcttgtatgtgatagtattctctttcttgccccctcttgatacag
species | Zea mays |
transcript | GRMZM2G180704_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGAGAAAGGTAGGCTGCAGGAGGAAGAGGCTCGCCGTTTCTTCCAACAG ATTATATCCGGTGTTGAATATTGCCATAGAAACATGGTGGTGCATCGTGATEST: gi|211439527|gb|FL064919.1|FL064919
genomic: TTGAGAAAGGTAGGCTGCAGGAGGAAGAGGCTCGCCGTTTCTTCCAACAGgtgataccat ... cttgatacagATTATATCCGGTGTTGAATATTGCCATAGAAACATGGTGGTGCATCGTGAT
EST: TTGAGAAAGGTAGGCTGCAGGAGGAAGAGGCTCGCCGTTTCTTCCAACAG ATTATATCCGGTGTTGAATATTGCCATAGAAACATGGTGGTGCATCGTGATEST: gi|148969836|gb|EE020728.2|EE020728
genomic: TTGAGAAAGGTAGGCTGCAGGAGGAAGAGGCTCGCCGTTTCTTCCAACAGgtgataccat ... cttgatacagATTATATCCGGTGTTGAATATTGCCATAGAAACATGGTGGTGCATCGTGAT
EST: TTGAGAAAGGTAGGCTGCAGGAGGAAGAGGCTCGCCGTTTCTTCCAACAG ATTATATCCGGTGTTGAATATTGCCATAGAAACATGGTGGTGCATCGTGATEST: gi|149088708|gb|EE177828.2|EE177828
genomic: TTGAGAAAGGTAGGCTGCAGGAGGAAGAGGCTCGCCGTTTCTTCCAACAGgtgataccat ... cttgatacagATTATATCCGGTGTTGAATATTGCCATAGAAACATGGTGGTGCATCGTGAT
EST: TTGAGAAAGGTAGGCTGCAGGAGGAAGAGGCTCGCCGTTTCTTCCAACAG ATTATATCCGGTGTTGAATATTGCCATAGAAACATGGTGGTGCATCGTGATEST: gi|149088317|gb|EE177414.2|EE177414
genomic: TTGAGAAAGGTAGGCTGCAGGAGGAAGAGGCTCGCCGTTTCTTCCAACAGgtgataccat ... cttgatacagATTATATCCGGTGTTGAATATTGCCATAGAAACATGGTGGTGCATCGTGAT
EST: TTGAGAAAGGTAGGCTGCAGGAGGAAGAGGCTCGCCGTTTCTTCCAACAG ATTATATCCGGTGTTGAATATTGCCATAGAAACATGGTGGTGCATCGTGATEST: gi|94473981|gb|EB702939.1|EB702939
genomic: TTGAGAAAGGTAGGCTGCAGGAGGAAGAGGCTCGCCGTTTCTTCCAACAGgtgataccat ... cttgatacagATTATATCCGGTGTTGAATATTGCCATAGAAACATGGTGGTGCATCGTGAT
EST: TTGAGAAAGGTAGGCTGCAGGAGGAAGAGGCTCGCCGTTTCTTCCAACAG ATTATATCCGGTGTTGAATATTGCCATAGAAACATGGTGGTGCATCGTGATEST: gi|211006231|gb|FL064937.1|FL064937
genomic: TTGAGAAAGGTAGGCTGCAGGAGGAAGAGGCTCGCCGTTTCTTCCAACAGgtgataccat ... cttgatacagATTATATCCGGTGTTGAATATTGCCATAGAAACATGGTGGTGCATCGTGAT
EST: TTGAGAAAGGTAGGCTGCAGGAGGAAGAGGCTCGCCGTTTCTTCCAACAG ATTATATCCGGTGTTGAATATTGCCATAGAAACATGGTGGTGCATCGTGATEST: gi|148974739|gb|EE025550.2|EE025550
genomic: TTGAGAAAGGTAGGCTGCAGGAGGAAGAGGCTCGCCGTTTCTTCCAACAGgtgataccat ... cttgatacagATTATATCCGGTGTTGAATATTGCCATAGAAACATGGTGGTGCATCGTGAT
EST: TTGAGAAAGGTAGGCTGCAGGAGGAAGAGGCTCGCCGTTTCTTCCAACAG ATTATATCCGGTGTTGAATATTGCCATAGAAACATGGTGGTGCATCGTGATEST: gi|211324790|gb|FL345978.1|FL345978
genomic: TTGAGAAAGGTAGGCTGCAGGAGGAAGAGGCTCGCCGTTTCTTCCAACAGgtgataccat ... cttgatacagATTATATCCGGTGTTGAATATTGCCATAGAAACATGGTGGTGCATCGTGAT
EST: TTGAGAAAGGTAGGCTGCAGGAGGAAGAGGCTCGCCGTTTCTTCCAACAG ATTATATCCGGTGTTGAATATTGCCATAGAAACATGGTGGTGCATCGTGAT
genomic: TTGAGAAAGGTAGGCTGCAGGAGGAAGAGGCTCGCCGTTTCTTCCAACAGgtgataccat ... cttgatacagATTATATCCGGTGTTGAATATTGCCATAGAAACATGGTGGTGCATCGTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATGTTGTTATGGAGTATGTTAAGTGTGGGGAATTATTTGATTACATTGTTGAGAAAGGTAGGCTGCAGGAGGAAGAGGCTCGCCGTTTCTTCCAACAGgtgataccatttctttctgtttgtttgtgctacaattatgataaacttaggtttacaagaagacagcaaatcaaaacatctgtgatattcttctcaagtgtgcttgtatgtgatagtattctctttcttgccccctcttgatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG