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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCTCTGATGATGCTAAGGAGGTAGTCCATTACCAAACAATCTCACCAAAGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatcacattggtgaagtggaacttaagctctcatgcaacttcttttgaaattatcaactcttgcattgaaacaagttcactgaccgatgtcatgattttcttttcttag

Basic information

species Zea mays
transcript GRMZM2G179737_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179737_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g03060.1 (Oryza sativa), 5'ss of exon 3
CAGCTCTGATGATGCTAAGGAGGTAGTCCATTACCAAACAATCTCACCAAAGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatcacattggtgaagtggaa-cttaagctctcatgcaacttcttttgaaattatcaactcttgcattgaaacaagttcactgaccgatgtcatgattttcttttcttag
|   ||||||||  |||| ||  | ||| | || || ||| | || |||||||||||||  ||||||||||| ||||||||||| |||||||||||  |||| |||            | ||  |  |  || |       ||| |||  ||| | | |||  |||||    || |  || |  |   |   ||  |||  |  | || | ||||
CTCTTCTGATGAGACTAAAGAAATGGTCTACTATCAGACAGTATCCCCAAAGAGCTTAGTGAAATCTGTTCTTGAGGAAGGTGGTTGGTCAAACTTGGTGgtgagttgagttccccccacgtcaattcacaaacaactgaccaatttcaattgcagt-atctgctcttattgtgcacaaactcaaacaattcataacattgtgattttattttag

upper sequence: GRMZM2G179737_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g03380.1 (Oryza sativa), 5'ss of exon 3
CAGCTCTGATGATGCTAAGGAGGTAGTCCATTACCAAACAATCTCACCAAAGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagta---------tcacattggtgaagtggaacttaagctctcatgcaact------tcttttgaaattatcaactcttgcattgaaacaagttca----ctgaccgatgtcatgattttcttttcttag------
|   |||||||| ||||| ||  |||||||||| || ||| | || || ||||||||||  ||||||||||| || |||||||| |||||||||||  |||| |||           ||| |    |  |  | || | |  || |   |||||        |  |   | ||||   ||||    || |  || || |     | | | || |||| |  || |  | |||       
CTCTTCTGATGAGGCTAAAGAAATAGTCCATTATCAGACAGTATCCCCGAAGAGCTTAGTGAAATCTGTTCTTGAAGAAGGTGGTTGGTCAAACTTGGTGgtgagttgagttccccccacgtcctagttgatgcacctcaattcacgaacaactggccaacttcattgcagtatctgttcttattgtgcacaaaatttaagtcttaaacaat-tcataacattgtgattttatttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16746113|gb|BM032543.1|BM032543
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|18385139|gb|BM418338.1|BM418338
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|110515503|gb|EE020091.1|EE020091
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|93012420|gb|EB637940.1|EB637940
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211029480|gb|FL265541.1|FL265541
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|18385304|gb|BM418503.1|BM418503
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211039303|gb|FL265600.1|FL265600
EST:     AGAGCTTAGCTAAATCTGTTCTCGAAGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211034407|gb|FL265570.1|FL265570
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|13198687|gb|BG354489.1|BG354489
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|16746010|gb|BM032440.1|BM032440
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211027041|gb|FL265533.1|FL265533
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|18384807|gb|BM418006.1|BM418006
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|91054011|gb|EB164429.1|EB164429
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211031963|gb|FL265563.1|FL265563
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|19351534|gb|BM896066.1|BM896066
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211036856|gb|FL265584.1|FL265584
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|18384808|gb|BM418007.1|BM418007
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211036863|gb|FL265591.1|FL265591
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|5268511|gb|AI770475.1|AI770475
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTTATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|149014431|gb|EE044038.2|EE044038
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|32831746|gb|CD971424.1|CD971424
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTTATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211039304|gb|FL265601.1|FL265601
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211031958|gb|FL265558.1|FL265558
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|7216914|gb|AW563036.1|AW563036
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211029479|gb|FL265540.1|FL265540
EST:     AGAGCTTAGCTRAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211036867|gb|FL265595.1|FL265595
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211031967|gb|FL265567.1|FL265567
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211029478|gb|FL265539.1|FL265539
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGYTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|13198621|gb|BG354423.1|BG354423
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211036860|gb|FL265588.1|FL265588
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGTAGGATACTCAGAATAATGTTGATGTTGCCATTGTYTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211036859|gb|FL265587.1|FL265587
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211029490|gb|FL265551.1|FL265551
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGA-GGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211079594|gb|FK945964.1|FK945964
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211027045|gb|FL265537.1|FL265537
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|20507208|gb|BQ279531.1|BQ279531
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTTATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|18384806|gb|BM418005.1|BM418005
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|71432608|gb|DR813658.1|DR813658
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|91054662|gb|EB165080.1|EB165080
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211036857|gb|FL265585.1|FL265585
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211027046|gb|FL265538.1|FL265538
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211036870|gb|FL265598.1|FL265598
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|211031960|gb|FL265560.1|FL265560
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|19350892|gb|BM895424.1|BM895424
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|149110590|gb|EE294202.2|EE294202
EST:     AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
EST: gi|4610088|gb|AI600927.1|AI600927
EST:     AAGGTGGCTGGTCAAACTTCATG                         TGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT
genomic: AAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 270

CAGCTCTGATGATGCTAAGGAGGTAGTCCATTACCAAACAATCTCACCAAAGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 457

CAGCTCTGATGATGCTAAGGAGGTAGTCCATTACCAAACAATCTCACCAAAGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 380

CAGCTCTGATGATGCTAAGGAGGTAGTCCATTACCAAACAATCTCACCAAAGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 579

CAGCTCTGATGATGCTAAGGAGGTAGTCCATTACCAAACAATCTCACCAAAGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatca ... cttttcttagTGCTCAAGGGAGGATACTCAGAATAATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGCTCTGATGATGCTAAGGAGGTAGTCCATTACCAAACAATCTCACCAAAGAGCTTAGCTAAATCTGTTCTCGAGGAAGGTGGCTGGTCAAACTTCATGgtaagtatcacattggtgaagtggaacttaagctctcatgcaacttcttttgaaattatcaactcttgcattgaaacaagttcactgaccgatgtcatgattttcttttcttag

- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT