Sequence
atgc intronic sequence ATGC exonic sequenceGAACATACATATGTGACTTTGCTTACTACACGATCAGATGCTTTTTATGATCTCAAAGATTCCAGgtgagctagctaataaatgactaagcatggtttggatgtcacgaggtgtctgaatgtgtgccaccaaaaataaactgacataacttattcttttgtgaacaatgtctag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G179732_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g74460.2 (Oryza sativa), 5'ss of exon 10
GAACATACATATGTGACTTTGCTTACTACACGATCAGATGCTTTTTATGATCTCAAAGATTCCAGgtgagctagctaat-aaatgactaagcatggtttggatgtcacgaggtgtctgaatgtgtgccacc--aaaaataaactgacataa----cttattcttttgtgaacaatgtctag
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GAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCCTTTTATGATCTGAAAGATTCCAGgtgagctatacaatcaagtgaccacgtctcttaaaaatatcatga--tgcctgagcatgtcctgtcttaagtgtatatggaattaatttcctttcccttttatgaacattgtgtag
upper sequence: GRMZM2G179732_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv06s0004g02820.t01 (Vitis vinifera), 5'ss of exon 10
GAACATACATATGTGACTTTGCTTACTACACGATCAGATGCTTTTTATGATCTCAAAGATTCCAGgtgagcta----gctaataaatgactaa-gcatggt----ttggatgtcacgaggtgtctgaatgtgtgccac-caaaaat------aaactgacata---acttattcttttgtgaacaatgtctag----------------------------------------------
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GTTGACACATACTTGATGTTGCTTACTACTAAATCAGATGCTTTCTATCATCTCAAAGATTGCAGgtaaaccatgacgctttaacttgataaatgcttggtgaaatttgatagcagaagccaactaaatattttctccacatgaatgatggaaaattcacatcttcgcctagtgtgttccagataatttattcttgtttcctgtcttcttcctgtgttaagatttaactaattctatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211302534|gb|FL247480.1|FL247480EST: TTTTATGATCTCAAAGATTCCAG GGCCCACATTCAAAATGCTCTTTTAAAGTCAAATGTCCTCATCGAAGTCCA
genomic: TTTTATGATCTCAAAGATTCCAGgtgagctagc ... caatgtctagGGCCCACATTCAAAATGCTCTTTTAAAGTCAAATGTCCTCATCGAAGTCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAACATACATATGTGACTTTGCTTACTACACGATCAGATGCTTTTTATGATCTCAAAGATTCCAGgtgagctagctaataaatgactaagcatggtttggatgtcacgaggtgtctgaatgtgtgccaccaaaaataaactgacataacttattcttttgtgaacaatgtctag
- - - - - - - - - - - - - - - - - CAGATG