1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACGAAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggattctattttctgatagttctcttctttgattaatgctgccatgttttcagttataattctgacaagctaattaatttatccatag
species | Zea mays |
transcript | GRMZM2G179429_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTG GAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTAEST: gi|89248029|gb|DY619815.1|DY619815
genomic: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
EST: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTG GAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTAEST: gi|31364129|gb|CD448484.1|CD448484
genomic: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
EST: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTG GAAGAAGAAGCTAGGGCGCGGAAAGCAAAGGAGGAGGCTGCTGCTGCTTTAEST: gi|91057069|gb|EB167487.1|EB167487
genomic: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
EST: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTG GAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTAEST: gi|60357983|gb|DN224956.1|DN224956
genomic: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
EST: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTG GAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTAEST: gi|76014913|gb|DT942083.1|DT942083
genomic: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
EST: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTG GAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTAEST: gi|148956262|gb|EC902060.2|EC902060
genomic: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
EST: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTG GAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTAEST: gi|91048409|gb|EB158827.1|EB158827
genomic: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
EST: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTG GAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTAEST: gi|31364620|gb|CD448975.1|CD448975
genomic: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
EST: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTG GAAGAAGAAGCTAGGGCGCGGAAAGCAAAGGAGGAGGCTGCTGCTGCTTTAEST: gi|78112542|gb|DV530936.1|DV530936
genomic: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
EST: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTG GAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTAEST: gi|18384245|gb|BM417444.1|BM417444
genomic: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
EST: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTG GAAGAAGAAGCTAGGGCGCGGAAAGCAAAGGAGGAGGCTGCTGCTGCTTTAEST: gi|71307153|gb|DR789747.1|DR789747
genomic: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
EST: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTG GAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTAEST: gi|71773571|gb|DR971469.1|DR971469
genomic: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
EST: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTG GAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTAEST: gi|78112541|gb|DV530935.1|DV530935
genomic: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
EST: AATGAGGA-GAAGAAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTG AAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTAEST: gi|148932548|gb|EC876363.2|EC876363
genomic: AATGAGGAGGAAG-AAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
EST: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTG GAAGAAGAAGCTAGGGCGCGGAAAGCAAAGGAGGAGGCTGCTGCTGCTTTAEST: gi|71773570|gb|DR971468.1|DR971468
genomic: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
EST: AATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCAC-AGAAGAGGC-ATTG GAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTAEST: gi|87153892|gb|DY398681.1|DY398681
genomic: AATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAG-AGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
EST: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTG GAAGAAGAAGCTAGGGCGCGGAAAGCAAAGGAGGAGGCTGCTGCTGCTTTAEST: gi|71757661|gb|DR955598.1|DR955598
genomic: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
EST: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTG GAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTAEST: gi|94472565|gb|EB701523.1|EB701523
genomic: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
EST: AGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTG GAAGAAGAAGTTAGGGCACGAAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTEST: gi|148958245|gb|EC904458.2|EC904458
genomic: AGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACG-AAAAGCAAAGGAGGAGGCTGCTGCTGCTTT
EST: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTG GAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTAEST: gi|148959747|gb|EC905644.2|EC905644
genomic: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
EST: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTG GAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
genomic: AAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggatt ... ttatccatagGAAGAAGAAGCTAGGGCACGAAAAGCAAAGGAGGAGGCTGCTGCTGCTTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAAGAACCTGCACGGGATTCATGGAGGAGTAAACAAGACCGATACGACGAAATGAGGAGGAAGAAGGATGAGGAGCGTGAGGCACAAGAGAGGCAATTGgttagggattctattttctgatagttctcttctttgattaatgctgccatgttttcagttataattctgacaagctaattaatttatccatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG