1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTATCAAAATCATTAGGGGCATTAAAAAGTACAGGGATGCTGCAATGATCGAAATTGGCATGCTCGAGCAGCTTGGTAAATATGATGAAAGTAGATCTAGgtgagtttgctggttcggttaacacccttctgtatgctttacattcataagattgcttgtatatataagctggtctattttgcagttgtgttcaaattcg...
species | Zea mays |
transcript | GRMZM2G179308_T04 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAAATTGGCATGCTCGAGCAGCTTGGTAAATATGATGAAAGTAGATCTAG GTTTCATCCCGATCCCCAAAGGAGGGATCCTATTACAAGCGGGTGCCCAAGEST: gi|32850031|gb|CD989712.1|CD989712
genomic: GAAATTGGCATGCTCGAGCAGCTTGGTAAATATGATGAAAGTAGATCTAGgtgagtttgc ... catttgctagGTTTCATCCCGATCCCCAAAGGAGGGATCCTATTACAAGCGGGTGCCCAAG
EST: GAAATTGGCATGCTCGAGCAGCTTGGTAAATATGATGAAAGTAGATCTAG GTTTCATCCCGATCCCCAAAGGAGGGATCCTATTACAAGCGGGTGCCCAAGEST: gi|32934327|gb|CF039139.1|CF039139
genomic: GAAATTGGCATGCTCGAGCAGCTTGGTAAATATGATGAAAGTAGATCTAGgtgagtttgc ... catttgctagGTTTCATCCCGATCCCCAAAGGAGGGATCCTATTACAAGCGGGTGCCCAAG
EST: GAAATTGGCATGCTCGAGCAGCTTGGTAAATATGATGAAAGTAGATCTAG GTTTCATCCCGATCCCCAAAGGAGGGATCCTATTACAAGCGGGTGCCCAAG
genomic: GAAATTGGCATGCTCGAGCAGCTTGGTAAATATGATGAAAGTAGATCTAGgtgagtttgc ... catttgctagGTTTCATCCCGATCCCCAAAGGAGGGATCCTATTACAAGCGGGTGCCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATCAAAATCATTAGGGGCATTAAAAAGTACAGGGATGCTGCAATGATCGAAATTGGCATGCTCGAGCAGCTTGGTAAATATGATGAAAGTAGATCTAGgtgagtttgctggttcggttaacacccttctgtatgctttacattcataagattgcttgtatatataagctggtctattttgcagttgtgttcaaattcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT