Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGCAGTTATGCACGAATTGTGTCTCATACACACTGATTTAAAGCCTGAGAACATTCTCCTTGTTTCTCCGGAGTACATTAAAGTGCCTGATTACAAAgtatattttgttcttttatttacatcacctacccaagatttaccttgccctgtgcttgttgatttctgttgtaataggttagtgaatattgaatatggtactgatcctctttttttcatttgctag

Basic information

species Zea mays
transcript GRMZM2G179308_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179308_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g27520.4 (Oryza sativa), 5'ss of exon 7
TGTTGCAGTTATGCACGAATTGTGTCTCATACACACTGATTTAAAGCCTGAGAACATTCTCCTTGTTTCTCCGGAGTACATTAAAGTGCCTGATTACAAAgtatattttgttcttttatttacatcacctacccaagatttaccttgccctgtgcttgttgatttctgttg-taataggttagtgaatattgaatatggtactgatcctctttttttcatttgctag
        ||||||| |||||| | ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||  ||  | ||||    |   |||     | | | |  ||      ||  | || | ||   | |   | | |    |||  | || |||||  |    || | ||||||
--------TTATGCATGAATTGCGCCTCATTCACACTGATTTAAAGCCTGAGAACATTCTTCTTGTTTCTCCAGAGTACATTAAAGTGCCCGATTACAAAgtatactttgttcttctacctatttgacct-tttagcctttttaacgtcttctttttacccggtttagctgattatgattcaacaattttatgttatctttctaatccttctacaatc-tctgctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|45568628|gb|CK986157.1|CK986157
EST:     CCTTGTTTCTCCGGAGTACATTAAAGTGCCTGAATACAAA                         GTCTCATCCCGATCCCCAAAGGAGGGATCCTATTACAAGCGGGTGCCCAAG
genomic: CCTTGTTTCTCCGGAGTACATTAAAGTGCCTGATTACAAAgtatattttg ... catttgctagGTTTCATCCCGATCCCCAAAGGAGGGATCCTATTACAAGCGGGTGCCCAAG
EST: gi|60341794|gb|DN208767.1|DN208767
EST:     AGAACATTCTCCTTGTTTCTCCGGAGTACATTAAAGTGCCTGATTACAAA                         GTTTCATCCCGATCCCCAAAGGAGGGATCCTATTACAAGCGGGTGCCCAAG
genomic: AGAACATTCTCCTTGTTTCTCCGGAGTACATTAAAGTGCCTGATTACAAAgtatattttg ... catttgctagGTTTCATCCCGATCCCCAAAGGAGGGATCCTATTACAAGCGGGTGCCCAAG