1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCAGAGGTGGATCAGAAACTTAAGTATGCTAATGATCTTTCGTCGGGTGTGATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTGgtcagtagatttttcaccaaacttttttattgttcttcataaatttgttgccagtatacttatcgctgtcatccttcattctttcag
species | Zea mays |
transcript | GRMZM2G178958_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTG CTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGTEST: gi|148936677|gb|EC880805.2|EC880805
genomic: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTGgtcagtagat ... attctttcagCTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGT
EST: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTG CTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGTEST: gi|93012171|gb|EB637691.1|EB637691
genomic: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTGgtcagtagat ... attctttcagCTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGT
EST: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTG CTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGTEST: gi|67022782|gb|CO451531.1|CO451531
genomic: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTGgtcagtagat ... attctttcagCTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGT
EST: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTG CTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGTEST: gi|67042042|gb|CO468297.1|CO468297
genomic: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTGgtcagtagat ... attctttcagCTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGT
EST: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTG CTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGTEST: gi|149111708|gb|EE190853.2|EE190853
genomic: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTGgtcagtagat ... attctttcagCTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGT
EST: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTG CTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGTEST: gi|211473206|gb|FL353033.1|FL353033
genomic: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTGgtcagtagat ... attctttcagCTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGT
EST: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTG CTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGTEST: gi|148972721|gb|EE023682.2|EE023682
genomic: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTGgtcagtagat ... attctttcagCTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGT
EST: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTG CTGTGCCTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGTEST: gi|149026812|gb|EE046172.2|EE046172
genomic: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTGgtcagtagat ... attctttcagCTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGT
EST: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTG CTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGTEST: gi|76291680|gb|DV031248.1|DV031248
genomic: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTGgtcagtagat ... attctttcagCTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGT
EST: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTG CTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGTEST: gi|211018803|gb|FL351168.1|FL351168
genomic: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTGgtcagtagat ... attctttcagCTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGT
EST: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTG CTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGTEST: gi|76013429|gb|DT940599.1|DT940599
genomic: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTGgtcagtagat ... attctttcagCTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGT
EST: GATATTCGGGAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTG CTGTGCTTGCGGAEST: gi|71323796|gb|DR798569.1|DR798569
genomic: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTGgtcagtagat ... attctttcagCTGTGCTTGCGGA
EST: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTG CTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGTEST: gi|211347363|gb|FL343425.1|FL343425
genomic: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTGgtcagtagat ... attctttcagCTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGT
EST: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTG CTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGTEST: gi|67023272|gb|CO452021.1|CO452021
genomic: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTGgtcagtagat ... attctttcagCTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGT
EST: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTG CTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGTEST: gi|71448100|gb|DR829150.1|DR829150
genomic: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTGgtcagtagat ... attctttcagCTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGT
EST: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTG CTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGTEST: gi|110519120|gb|EE023707.1|EE023707
genomic: GATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTGgtcagtagat ... attctttcagCTGTGCTTGCGGAGGAGGCGTCAAAGATCGCTTCTACTTACAGTGATGTGT
EST: ATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCCTG CTGTGCTTGCGGAGG
genomic: ATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCC-TGgtcagtagat ... attctttcagCTGTGCTTGCGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGAGGTGGATCAGAAACTTAAGTATGCTAATGATCTTTCGTCGGGTGTGATATTCGGAAGAGAGCTTGTGAACTCTCCTGCAAATGTCCTTACCCCTGgtcagtagatttttcaccaaacttttttattgttcttcataaatttgttgccagtatacttatcgctgtcatccttcattctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT