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GAAAAGAGTAGTTTCTGGTGTACAGCCAACAGGATCGGTTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatgtgttgctttgaaagtacaagttcctttgaattgcagtgtataggctttgcttaagtggtagagaactaaaaagaacttgaaaggaatgaa...
species | Zea mays |
transcript | GRMZM2G177970_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCAEST: gi|211458161|gb|FL127573.1|FL127573
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
EST: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCAEST: gi|211458164|gb|FL127576.1|FL127576
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
EST: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCAATEST: gi|50331394|gb|CO526520.1|CO526520
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCAAT
EST: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCAEST: gi|60398533|gb|DN231349.1|DN231349
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
EST: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCAEST: gi|211458162|gb|FL127574.1|FL127574
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
EST: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCAEST: gi|78120428|gb|DV538812.1|DV538812
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
EST: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCAEST: gi|71449704|gb|DR830754.1|DR830754
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
EST: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCAEST: gi|211458163|gb|FL127575.1|FL127575
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
EST: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAAGAGTAGTTTCTGGTGTACAGCCAACAGGATCGGTTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatgtgttgctttgaaagtacaagttcctttgaattgcagtgtataggctttgcttaagtggtagagaactaaaaagaacttgaaaggaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaggaa