1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTTTGGTTGGTGATGAGCTTGTAATAGATGGTGGAATGGCAACATTTGAAGTTACTGAGAAAATAGGAAATGATTTGCGCTGTAAGTGCACGGACCCAGgtttgcttcttcctcgagccaaattgtcattctggaggaacggaaaaatagttcaaaggaactttggccttcctacattgtcaacaaaggttattttgga...
species | Zea mays |
transcript | GRMZM2G177947_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGTTACTGAGAAAATAGGAAATGATTTGCGCTGTAAGTGCACGGACCCAG GATTGGGCTGACATCGAATTTGGGATAGCTGAAGGAGTTGATTGCATTGCTEST: gi|76012665|gb|DT939835.1|DT939835
genomic: AGTTACTGAGAAAATAGGAAATGATTTGCGCTGTAAGTGCACGGACCCAGgtttgcttct ... tatcttgtagGATTGGGCTGACATCGAATTTGGGATAGCTGAAGGAGTTGATTGCATTGCT
EST: AGTTACTGAGAAAATAGGATATGATTTGCGCTGTAAGTGCACGGACCCAG GATTGGGCTGACATCGAATTTGGGATAGCTGAAGGAGTTGATTGCATTGCT
genomic: AGTTACTGAGAAAATAGGAAATGATTTGCGCTGTAAGTGCACGGACCCAGgtttgcttct ... tatcttgtagGATTGGGCTGACATCGAATTTGGGATAGCTGAAGGAGTTGATTGCATTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTTGGTTGGTGATGAGCTTGTAATAGATGGTGGAATGGCAACATTTGAAGTTACTGAGAAAATAGGAAATGATTTGCGCTGTAAGTGCACGGACCCAGgtttgcttcttcctcgagccaaattgtcattctggaggaacggaaaaatagttcaaaggaactttggccttcctacattgtcaacaaaggttattttgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaggaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacaaag