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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGATCCGGAGGCAGATCGAAGACCTCGAGCGCGCCGGAGGCGTCGACAGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctgccgctacctgtctggtggtttgttacccgcaacatgtgtgtagctcaaaggctagcttgtttgtttgggtcgcgcgtgcctacctgcatgcag

Basic information

species Zea mays
transcript GRMZM2G177912_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G177912_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 3
ACAAGATCCGGAGGCAGATCGAAGACCTCGAGCGCGCCGGAGGCGTCGACAGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcag--gtctgccgctacctgtctggtggtttg--ttacccgcaacatgtgtgtagctcaaaggctagcttgtttgtttgggtcgcgcgtgcctacctgcatgcag
|||||||||||||||||||||| || || ||||||||||| || ||||| || ||||| |||||||| || ||||| ||||||||||||||||||||||||||    |   ||  || ||  |   |    |    ||| |     ||  | | | ||| ||   ||       ||  ||   | ||   | | |   | |  |   
ACAAGATCCGGAGGCAGATCGAGGAGCTAGAGCGCGCCGGGGGTGTCGAGAGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgctcgctcctgcccctgctgcctctcagcttagcgattccaactcttttgctaaagctctctacctcttccttcctttgcttcttcttcttttctag---

upper sequence: GRMZM2G177912_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA19G27360.1 (Glycine max), 5'ss of exon 3
ACAAGATCCGGAGGCAGATCGAAGACCTCGAGCGCGCCGGAGGCGTCGACAGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctgccgctacctgtctggtggtttgttacccgcaacatgtgtgtagctcaaaggctagcttgtttgtttgggt-cgcgcgtgcctacctgcatgcag
|||||||| || | ||||| || || |||||| | |     ||| |||||||||| ||||||||||||||||| || ||||||||  ||||| | |||||||  |  || ||| | | |             | |  | |      | |     | | |        | | | | |   |       |   ||  |  ||  | 
ACAAGATCAGGCGCCAGATTGAGGAGCTCGAGAGAGTTTCCGGCATCGACAGCGGCGCCCTCACCGTCGATGGTGTCCCCGTCGATTCCTACTTGACCAGgtttg-ccttccgtttcattcaccacatccaatcaatctctg---atcttcgatttatatatatatatatatatatatatatatatatatatatatatatatat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211359331|gb|FL325567.1|FL325567
EST:     AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: gi|9953349|gb|BE639932.1|BE639932
EST:     AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG                         GTTCGTGTGGGATGAGGGCAGGTACCCCACAATGTCGTCGCTCAAGGAGAT
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: gi|78120131|gb|DV538515.1|DV538515
EST:     AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: gi|211114226|gb|FL350275.1|FL350275
EST:     AGCGGGGCCCTCACCGTCGAWGGCGTTCCCGTCGACACCTAACTCACCAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGC
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGC
EST: gi|211267792|gb|FL344631.1|FL344631
EST:     AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: gi|211217973|gb|FL307283.1|FL307283
EST:     AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: gi|71303539|gb|DR787880.1|DR787880
EST:     AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: gi|211362192|gb|FL333555.1|FL333555
EST:     AGCGGGTCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: gi|148969238|gb|EE019992.2|EE019992
EST:     AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: gi|149104624|gb|EE290073.2|EE290073
EST:     AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: gi|211316704|gb|FL359227.1|FL359227
EST:     AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: gi|67016433|gb|CO445182.1|CO445182
EST:     AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: gi|211105804|gb|FL320712.1|FL320712
EST:     AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: gi|211283545|gb|FL347777.1|FL347777
EST:     AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTC
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTC
EST: gi|211064773|gb|FL350726.1|FL350726
EST:     AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG                         GTTCGTGTGGGATGAGGGCAAGTAC
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTAC
EST: gi|211460898|gb|FL364621.1|FL364621
EST:     AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: gi|211078718|gb|FL360383.1|FL360383
EST:     AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: gi|76288290|gb|DV027858.1|DV027858
EST:     AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: gi|211414492|gb|FL334083.1|FL334083
EST:     AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAA
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGA-
EST: gi|211381249|gb|FL356117.1|FL356117
EST:     AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCGTCGCTCAAGGAGAT
EST: gi|211467481|gb|FL327941.1|FL327941
EST:     AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAG                         GTTCGTGTGGGATGAGGGCAAGT
genomic: AGCGGGGCCCTCACCGTCGATGGCGTTCCCGTCGACACCTACCTCACCAGgtcaggtctg ... ctgcatgcagGTTCGTGTGGGATGAGGGCAAGT