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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGACTCCCGCTTGCCTAACATGCCAATTATTTATGCTAGTGATGCTTTTACATCATTAACAGgtaattgtttttgactgttagtaccagagtacgcattctagcagtatgtaatatgtgcaacttccaatatattactgttatattttcaatatattgtttt...

Basic information

species Zea mays
transcript GRMZM2G176506_T04
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G176506_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g09120.2 (Oryza sativa), 5'ss of exon 3
GACTGACTCCCGCTTGCCTAACATGCCAATTATTTATGCTAGTGATGCTTTTACATCATTAACAGgtaattgt-ttttgactgttagtaccagagtacgcattctagcagtatgtaatatgtgcaacttccaatatattactgttatattttcaata-tattgtttt-
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GACTGACCCCCATTTGCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaattttgttttctagtat-ataatatgcattatacagatatttgtgatgtaatacatttca-gtgcca-tgttctatgactaatactagtattgta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78077483|gb|DV505917.1|DV505917
EST:     GCCTAACATGCCAATTATTTATGCTAGTGATGCTTTTACATCATTAACAG                         GTTACTCAAGAGAAGAAATATTGGGCTGTAACTGCAAAGTCTTAAATGGGC
genomic: GCCTAACATGCCAATTATTTATGCTAGTGATGCTTTTACATCATTAACAGgtaattgttt ... acttcttcagGTTACTCAAGAGAAGAAATATTGGGCTGTAACTGCAAAGTCTTAAATGGGC
EST: gi|60396027|gb|DN228897.1|DN228897
EST:     GCCTGACATGCCAATTATTTATGCTAGTGATGCTTTTACATCATTAACAG                         GTTACTCAAGAGAAGAAATATTGGGCTGTAACTGCAAAGTCTTAAATGGGC
genomic: GCCTAACATGCCAATTATTTATGCTAGTGATGCTTTTACATCATTAACAGgtaattgttt ... acttcttcagGTTACTCAAGAGAAGAAATATTGGGCTGTAACTGCAAAGTCTTAAATGGGC
EST: gi|166680836|gb|EG140230.1|EG140230
EST:     GCCTGACATGCCAATTATTTATGCTAGTGATGCTTTTACATCATTAACAG                         GTTACTCAAGAGAA
genomic: GCCTAACATGCCAATTATTTATGCTAGTGATGCTTTTACATCATTAACAGgtaattgttt ... acttcttcagGTTACTCAAGAGAA