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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTCTAGTGATACTCCTTTGCCACAGCATGCAGCAGTGAATGGCAGGAATGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaactctggtcattttggaatccaagttaatgttgaattatgtgttaagtctcacaactccccttttgaccag

Basic information

species Zea mays
transcript GRMZM2G175676_T06
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60339325|gb|DN206298.1|DN206298
EST:     GTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: GTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|60355014|gb|DN221987.1|DN221987
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|211020294|gb|FL072144.1|FL072144
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|60345015|gb|DN211988.1|DN211988
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|31558437|gb|CD527649.1|CD527649
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|161585690|gb|EY953332.1|EY953332
EST:     CGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACGTATGAAT
genomic: CGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|71445511|gb|DR826561.1|DR826561
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|211020297|gb|FL072147.1|FL072147
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|211020291|gb|FL072141.1|FL072141
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTT
EST: gi|211020292|gb|FL072142.1|FL072142
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACGTATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT