Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTCTAGTGATACTCCTTTGCCACAGCATGCAGCAGTGAATGGCAGGAATGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaactctggtcattttggaatccaagttaatgttgaattatgtgttaagtctcacaactccccttttgaccag

Basic information

species Zea mays
transcript GRMZM2G175676_T05
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211009129|gb|FL298875.1|FL298875
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|211006359|gb|FL298865.1|FL298865
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACGTATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|60672590|gb|DN475291.1|DN475291
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|60339325|gb|DN206298.1|DN206298
EST:     GTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: GTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|32854471|gb|CD994152.1|CD994152
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAAC
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAAC
EST: gi|60355014|gb|DN221987.1|DN221987
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|211006349|gb|FL298855.1|FL298855
EST:     GCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTNCAAG                         CACTGTCGAGTGGGTTACCGAATAGANGGAACTA-GCACCG-TACATATG
genomic: GCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACT-CAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGA-GGA-CTAAGCAACGGTACATATG
EST: gi|211003566|gb|FL298843.1|FL298843
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|32862735|gb|CF002417.1|CF002417
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|60345015|gb|DN211988.1|DN211988
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|31558437|gb|CD527649.1|CD527649
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|76285730|gb|DV025298.1|DV025298
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|161585690|gb|EY953332.1|EY953332
EST:     CGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACGTATGAAT
genomic: CGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|211003574|gb|FL298851.1|FL298851
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGNAG-ACTAAGNCA-CGGTACATATGA
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAG-AGGACTAAG-CAACGGTACATATGA
EST: gi|71445511|gb|DR826561.1|DR826561
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|211003568|gb|FL298845.1|FL298845
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|76911783|gb|DV164430.1|DV164430
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|211006354|gb|FL298860.1|FL298860
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|211003577|gb|FL298854.1|FL298854
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTACCGAATAGAGGACTAAGCAACGGTACATATGAAT
EST: gi|211003575|gb|FL298852.1|FL298852
EST:     TGCCGGGTATAGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACTGTCGAGTGGGTTAC
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... ttttgaccagCACTGTCGAGTGGGTTAC