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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTCTAGTGATACTCCTTTGCCACAGCATGCAGCAGTGAATGGCAGGAATGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaactctggtcattttggaatccaagttaatgttgaattatgtgttaagtctcacaactccccttttgaccagcactgtcgagtgggttaccg...

Basic information

species Zea mays
transcript GRMZM2G175676_T01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211006355|gb|FL298861.1|FL298861
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACAAGCATTCGTGATCCGCCCAATTGGCTCTCAGGGTGATCAAGTTATAC
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... tctgtcgcagCACAAGCATTCGTGATCCGCCCAATTGGCTCTCAGGGTGATCAAGTTATAC
EST: gi|26558237|gb|CA830472.1|CA830472
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACAAGCATTCGTGATCCGCCCAATTGGCTCTCAGGGTGATCAAGTTATAC
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... tctgtcgcagCACAAGCATTCGTGATCCGCCCAATTGGCTCTCAGGGTGATCAAGTTATAC
EST: gi|148958451|gb|EC904686.2|EC904686
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACAAGCATTCGTGATCCGCCCAATTGGCTCTCAGGGTGATCAAGTTATAC
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... tctgtcgcagCACAAGCATTCGTGATCCGCCCAATTGGCTCTCAGGGTGATCAAGTTATAC
EST: gi|87155765|gb|DY400554.1|DY400554
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACAAGCATTCGTGATCCGCCCAATTGGCTCTCAGGGTGATCAAGTTATAC
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... tctgtcgcagCACAAGCATTCGTGATCCGCCCAATTGGCTCTCAGGGTGATCAAGTTATAC
EST: gi|21987840|gb|BQ779368.1|BQ779368
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACAAGCATTCGTGATCCGCCCAATTGGCTCTCAGGGTGATCAAGTTATAC
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... tctgtcgcagCACAAGCATTCGTGATCCGCCCAATTGGCTCTCAGGGTGATCAAGTTATAC
EST: gi|76933581|gb|DV173510.1|DV173510
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACAAGCATTCGTGATCCGCCCAATTGGCTCTCAGGGTGATCAAGTTATAC
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... tctgtcgcagCACAAGCATTCGTGATCCGCCCAATTGGCTCTCAGGGTGATCAAGTTATAC
EST: gi|76933582|gb|DV173511.1|DV173511
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACAAGCATTCGTGATCCGCCCAATTGGCTCTCAGGGTGATCAAGTTATAC
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... tctgtcgcagCACAAGCATTCGTGATCCGCCCAATTGGCTCTCAGGGTGATCAAGTTATAC
EST: gi|148958452|gb|EC904687.2|EC904687
EST:     TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAG                         CACAAGCATTCGTGATCCGCCCAATTGGCTCTCAGGGTGATCAAGTTATAC
genomic: TGCCGGGTATGGTATCCCACCAAATCATTCATACGACACGCACACTCAAGgtgaggaaaa ... tctgtcgcagCACAAGCATTCGTGATCCGCCCAATTGGCTCTCAGGGTGATCAAGTTATAC