1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATTgtatgtgtactttactgccctcagttcaattctgcaactgttacctatataatggtggcttgctcatattatagaaattgaaaaaaacatttgttttaattgtggcattctttattgtgacccttggttaattgcaaaacag
species | Zea mays |
transcript | GRMZM2G175419_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT GAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGCEST: gi|78109291|gb|DV527707.1|DV527707
genomic: AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATTgtatgtgtac ... tgcaaaacagGAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGC
EST: AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT GAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGCEST: gi|15208745|gb|BI430629.1|BI430629
genomic: AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATTgtatgtgtac ... tgcaaaacagGAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGC
EST: AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT GAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGCEST: gi|21809627|gb|BQ667945.1|BQ667945
genomic: AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATTgtatgtgtac ... tgcaaaacagGAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGC
EST: AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT GAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGCEST: gi|76290330|gb|DV029898.1|DV029898
genomic: AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATTgtatgtgtac ... tgcaaaacagGAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGC
EST: AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT GAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGCEST: gi|32795893|gb|CD948129.1|CD948129
genomic: AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATTgtatgtgtac ... tgcaaaacagGAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGC
EST: AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT GAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGCEST: gi|60354503|gb|DN221476.1|DN221476
genomic: AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATTgtatgtgtac ... tgcaaaacagGAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGC
EST: AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT GAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGCEST: gi|94473189|gb|EB702147.1|EB702147
genomic: AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATTgtatgtgtac ... tgcaaaacagGAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGC
EST: AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT AAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGC
genomic: AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATTgtatgtgtac ... tgcaaaacagGAATTCAGTGACCCCCGTGATGCTGATGATGCACAGTACAACCTAGATGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATTgtatgtgtactttactgccctcagttcaattctgcaactgttacctatataatggtggcttgctcatattatagaaattgaaaaaaacatttgttttaattgtggcattctttattgtgacccttggttaattgcaaaacag
- - - AGAAGT
- - - - AGTGGA
- - - - - GTGGAG
- - - - - - - - TTGAAG
- - - - - - - - TGAAGC